BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0869.p (305 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 91 1e-19 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 86 2e-18 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 78 5e-16 gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg... 64 8e-12 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 59 3e-10 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 11/282 (3%) Query: 1 MDWNLLRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPL 60 M L+ + V +E+ G AA ++QP +S A+++LE+ +G L R E +TPL Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GEEIYAVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLARFHRRYPRV 120 G +I A A + A I A + + G RL ++ + + R P++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 121 EFRIEVMQSAAILDTLAKGSSGLGLCLCRKPVEKLERRLFLRHRYVLVCGRHHPLFAQRS 180 ++ + +L+ L +G + P + L + +V+ +HHP + S Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSS 180 Query: 181 VSMAELLEQNFV------CFASDQLGDTLSPLTVFRDQ-QGFTGHIAGTSPHVEEIRRMV 233 V+ L + + CF DQ+ + ++ F G G+S +E IR MV Sbjct: 181 VTTDNLKSETMLLLGNGHCF-RDQVLEVCPEMSRFSTSGDGIARTFEGSS--LETIRHMV 237 Query: 234 VAGVGLSFLPEHLI-GQDVTDGLLKVLPLGAPVAEIDVFLTW 274 +G+G++ LP+ + TDG+L+ +P P V L W Sbjct: 238 ASGIGITVLPQASVPDMHTTDGMLRYIPFVQPGPSRRVVLVW 279 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 6 LRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPLGEEIY 65 L+ F V + RAA L L+QPAVS +++LE+ G L + + LTP G E+ Sbjct: 53 LKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTELL 112 Query: 66 AVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLAR----FHRRYPRVE 121 +R + + A G L + ++S A D F R F R + V Sbjct: 113 HYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVIS-----AGDYFFPRLLVEFARSHQGVT 167 Query: 122 FRIEVMQSAAILDTLAKGSSGLGLCLCRKPVE-KLERRLFLRHRYVLVCGRHHPLFAQRS 180 + V +L+ LA + L + + R P + F H YV+V H L ++++ Sbjct: 168 LNLSVHNREGLLNQLANNLTDLAI-MVRPPTDMDTINEPFAPHPYVIVAAPDHHLVSKKN 226 Query: 181 VSMAELLEQNFVCFASDQLGDTLSPLTVFRDQQGFTG-----HIAGTSPHVEEIRRMVVA 235 + M+ L+ + FV ++ DT + + GF +IA E I++ V+A Sbjct: 227 IPMSTLIHEPFVV--REKGSDTWHSM-----EDGFGSRIDDLNIAMEIKSTETIKQAVIA 279 Query: 236 GVGLSFLPEHLIGQDVTDGLLKVLPL-GAPVAEIDVFLTWHGQRKLSAPEQAF 287 G+G+SFL H I ++ G L VL + G PV ++ ++ ++L QAF Sbjct: 280 GMGISFLSAHTISMELQAGSLTVLDVEGFPVM-LNWYVVHRKNKRLPPVAQAF 331 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 10/248 (4%) Query: 6 LRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPLGEEIY 65 LR F+ V +E GRAA L ++QP +SQA++ LE +G L R LTP G + Sbjct: 8 LRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPAGSALL 67 Query: 66 AVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLARFHRRYPRVEFRIE 125 A+ + A + +G L L +S + FL F YP VE + Sbjct: 68 PEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGVEIDLR 127 Query: 126 VMQSAAILDTLAKGSSGLGLCLCRKPVE---KLERRLFLRHRYVLVCGRH-HPLFAQRSV 181 + LD L +G +GL + P + +L+ L +L + L ++SV Sbjct: 128 EATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALKGKQSV 187 Query: 182 SMAELLEQNFVCFA---SDQLGDTLSPLTVFRDQQGFTGHIAGTSPHVEEIRRMVVAGVG 238 ++ L E + F + D + L+ +RD G T HI + ++ I +V AG+G Sbjct: 188 ALQSLAELPLIIFPRRIAPAFHDAI--LSCYRD-AGLTPHIGQEAIQMQTIIGLVSAGMG 244 Query: 239 LSFLPEHL 246 ++ +P+ + Sbjct: 245 IALVPQSV 252 >gi|134096571|ref|YP_001101646.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 319 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 130/312 (41%), Gaps = 41/312 (13%) Query: 1 MDWNLLRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPL 60 +D NLLR F V+ E+ + RAA+ L ++QPAVS ALRRL +A+G L+ R + T Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPTSR 65 Query: 61 GEEIYAVAREMYGMVARIDGAAGHAGEDV--AGHLRLLLMSRVQSAAYDDFLAR-FHRRY 117 E++ V R ++ ++ A DV A + M+ +A + FL R + Sbjct: 66 ATELWPVVRR---ALSDLETAVTPDTFDVSRATTTFRMAMADATAALWLPFLVRAIEKEA 122 Query: 118 PRVEFRIEVMQSAAILDTLAKGSSGLGLCLC-----------RKPVEKLERRLFLRHRYV 166 P + R+ + + L +G L + V ++ YV Sbjct: 123 PGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYV 182 Query: 167 LVCGRHHPLFAQR----SVSMAELLEQNFVCFASDQLGDTLSPL-----TVFRDQQGFT- 216 V ++HPL + + A L +F A + D LS + + Q FT Sbjct: 183 CVMRKNHPLAKEELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVNQFFTA 242 Query: 217 GHIAGTSPHVEEIRRMVVAGVGLSFLPEHLIGQDVTDGLLKVLPLGAPVAEIDVFLTWHG 276 G + +S + + R ++A G+ E LI +D LP P E+ V + WH Sbjct: 243 GRVVASSDLITVLPRHLIASTGME---EALIAKD--------LPFSLP--EVHVDMLWH- 288 Query: 277 QRKLSAPEQAFL 288 +R P +L Sbjct: 289 ERDARNPAHKWL 300 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 81/191 (42%) Query: 2 DWNLLRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPLG 61 D L F+ V+ + A LS + S +R +EE +G LL R TP+G Sbjct: 4 DLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPVG 63 Query: 62 EEIYAVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLARFHRRYPRVE 121 + + AR R+ G + + GH+R++ + + + L+ F +P V Sbjct: 64 KALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNVN 123 Query: 122 FRIEVMQSAAILDTLAKGSSGLGLCLCRKPVEKLERRLFLRHRYVLVCGRHHPLFAQRSV 181 +E S I+ L +G+ +G+ E F R LV R HPL + S+ Sbjct: 124 IDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVRSSI 183 Query: 182 SMAELLEQNFV 192 AE L+ +F+ Sbjct: 184 HFAETLDYDFI 194 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 585,358 Number of extensions: 24413 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 7 Length of query: 305 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 224 Effective length of database: 733,452 Effective search space: 164293248 Effective search space used: 164293248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)