BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0866.p (811 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 386 e-108 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 176 5e-45 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 110 2e-25 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust. Identities = 263/724 (36%), Positives = 382/724 (52%), Gaps = 59/724 (8%) Query: 114 GGATPTATPLASAQGS------LPTINVSANAES-------WSARTSSSTTKTETPLIEV 160 GG++ A+P + + S LP +NVS E+ + A SS+ TKT+T L E Sbjct: 35 GGSSLQASPASQNESSAPAVTTLPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAET 94 Query: 161 PQSISVVTAERIAALGATTARDALGYTPGVNISPYGADSRYDWINLRGFDAYSPGFYLDG 220 Q+++VVT ++I GAT +DAL Y GV YG DSR D + +RG SP Y+DG Sbjct: 95 LQAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRTDSVLVRGA---SPDVYIDG 151 Query: 221 LPLRNANSF--AVWRTENYGIDQIAVLRGPASVLFGQAGPGGVVNVVSKLPSAETQRELQ 278 L R AN + + R + + +++I VLRGPA++ +GQ GGVVN+VSK P AE Q E+ Sbjct: 152 L--RQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVG 209 Query: 279 VQLGSNQRRQVGGDFGGAMDADGKLLYRFIGVIRDAEMPAGGMKNDRIYLAPSLTWKISR 338 VQLG+ R+Q+ D G + D + LYR + V R+A+ +K+DR +APSLTWK + Sbjct: 210 VQLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTWKPNG 269 Query: 339 DTSLTLQASLLRDNGGVYTRTRPLVGSLVPTPIGTTIPSGLYIGNPNFDHFSQNQELLGY 398 TSLTLQ RD G ++ P G L P + IP+ +IG P D + +++ LGY Sbjct: 270 VTSLTLQGLYQRDRTGSTSQFLPWAGMLTPN-VNGMIPTSRFIGEPG-DRYDTDRQSLGY 327 Query: 399 RLEHRFNEAVVFRQSARVGHMSVDYHALQQPNFITVDAT-VPN----DPANFQSLSRNLF 453 EH+ N+ FRQ+ R VDY +F T +T +P DP N + + R Sbjct: 328 LFEHQLNDNWTFRQNFRYAVNEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLIGRYAD 387 Query: 454 GSRESATMFSIDNQLQLDFSTAGIRHTMLLGVDFQRSRFDALSFSGGSAPLLDIAAPTYP 513 S + +ID LQ T ++H +L G+D+ R + D SG +D+ AP Y Sbjct: 388 DSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDRQ--SGFGMDTIDVYAPVYG 445 Query: 514 NGPFVVPAPYNDTRAVLTQTGFYLQDQIKWDNGVELTLGGRHDSADNTVDNRLDGTRTSS 573 NG VV +D ++V Q G YLQDQIK ++ G RHD V+N L G+ Sbjct: 446 NG--VVATLADDPQSVQRQIGLYLQDQIKIGKNWIVSAGLRHDR----VNNALAGSEDEE 499 Query: 574 TDRKFTARAALLYRAPNGLAPYVSYTESFNPTATVDPLTNLPFGPETGKQTEVGLRYQPS 633 + R T R ++Y NG +PYVSY+ESF P A + + F P G+Q E G++Y P Sbjct: 500 S-RATTKRVGVMYLLENGWSPYVSYSESFTPVAGTNAY-DQRFKPVRGEQIEGGVKYMPV 557 Query: 634 GTRDLYSAALFDLKRQNYISYDAN--FMPTQKGEISVRGLELEAVTEPLPSLRLTAAYSY 691 ++AA++ + +N + D + Q G+ RG+ELE P++ + A Y+Y Sbjct: 558 NGHSQFTAAIWKIDEKNKSTTDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVLAHYNY 617 Query: 692 TPRAVVTNSSRPAEIGKQATAVPLHQLSLWGDHRLH----NGIRLGLGARYVSATSGNGG 747 T ++ +Q VP HQ + WG R +G LG GARY+S+ Sbjct: 618 T------------DLDEQLDEVPRHQAAAWGKWRFSIGGVSGFALGAGARYMSSFR---D 662 Query: 748 GTPVKVPGYTLLDGLVGYDLAHWSLALNLRNLTNKTYLTNCDTAAATCYYGDQRSILATA 807 G P TLLD L+ +D +W ALN+ NLT+K Y C + C+YG +RS + TA Sbjct: 663 GVAPTTPSVTLLDALLSWDTMNWRYALNVNNLTDKVYNATC-LSRGDCWYGARRSAVLTA 721 Query: 808 TYRW 811 TY++ Sbjct: 722 TYKF 725 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 176 bits (446), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 198/762 (25%), Positives = 337/762 (44%), Gaps = 78/762 (10%) Query: 104 AAGYVLMPDTGGATPTATPLASAQGSLPTINVSANAESWSARTSSSTTKTETPLIEVPQS 163 A +V++P G T A + S LP + V ES+ A T SS T+ PL+ Q+ Sbjct: 22 AMAFVVLP---GTTVYAQQVTSV---LPEVEVHGTTESYKADTVSSPKFTQ-PLLNTTQT 74 Query: 164 ISVVTAERIAALGATTARDALGYTPGVNISPYGADSRY---DWINLRGFDAYSPGFYLDG 220 I+V+ E + G T +AL TPGV G + D I +RGFD S ++DG Sbjct: 75 ITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIYMRGFDT-SSSIFVDG 133 Query: 221 LPLRNANSFAVWRTENYGIDQIAVLRGPASVLFGQAGPGGVVNVVSKLPSAETQRELQVQ 280 + R+ S + + + I+QI V +GPA G+ P G +N+ +K P+ + V Sbjct: 134 V--RDLGSIS---RDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMKEAYSGSVS 188 Query: 281 LGSNQRRQVGGDFGGAMDADGKLLYRFIGVIRDAEMPAGG--MKNDRIYLAPSLTWKISR 338 +GS +++ D +D DG +R I +++D AG +KNDR +A + + + Sbjct: 189 VGSGDYKRITADLNKPLDFDGGAAFR-INLLKDDSGVAGRDIVKNDRQGIAAAFAFGLKT 247 Query: 339 DTS-----LTLQASLLRDNGGVYTRTRPLVGSLV------PTPIGTTIPSGLY------I 381 +T L + S + D GGV T P S V TP IP+ + + Sbjct: 248 NTRTYLNYLHVDQSNIPD-GGVPTIGLPGYSSPVQAANPAATPPVVAIPARPFLNGASRV 306 Query: 382 GNPNF-----DHFSQNQELLGYRLEHRFNEAVVFRQSARVGHMSVDY----HALQQPNFI 432 + NF D ++L R+EH + V + + R G S +Y PN + Sbjct: 307 NSSNFYGTVGDFDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGFMGSAPNLL 366 Query: 433 TVDATVPNDPANFQSLSRNLFGSRESATMFSIDNQLQLDFSTAGIRHTMLLGVDFQRSRF 492 T + P DP + +L+R+ ++ +FS L F T ++H+++ GV+ + Sbjct: 367 TPN---PADPTTW-TLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHSLVTGVELSSEKQ 422 Query: 493 DALSFSGGSAPLLDI-AAPTYPNGPFVVPAPYN------DTRAVLTQTGFYLQDQIKWDN 545 +L ++G L I AA Y P++V YN ++ YL D ++ Sbjct: 423 RSLGYAG----LGTISAANLYNPNPYLVRTGYNPVGNGTNSEGRTNTLSVYLFDTLELSP 478 Query: 546 GVELTLGGRHDSADNTVDNRLDGTRTSSTDRKFTA---RAALLYRAPNGLAPYVSYTESF 602 ++ G R D D ++ R ++ ++ T + LY+ + YVSY S Sbjct: 479 QWQINGGVRVDHYDTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSK 538 Query: 603 NP--------TATVDPLTNLPFGPETGKQTEVGLRYQPSGTRDLYSAALFDLKRQNYISY 654 P ++ + N+ + P+ + E+G ++ R + A++ +N I Sbjct: 539 QPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEG 598 Query: 655 DANFMPTQKGEISVRGLELEAVTEPLPSLRLTAAYSYTPRAVVTNSSRPAEIGKQATA-V 713 +A TQ G+ V G+EL V E + +++A Y+ R VT + + G + Sbjct: 599 NATDGFTQTGKKRVEGVELGVVGEITSAWQVSAGYTRM-RTDVTAGAIVNQDGTSGLSYT 657 Query: 714 PLHQLSLWGDHRLHNGIRLGLGARYVSAT---SGNGGGTPVKVPGYTLLDGLVGYDLA-H 769 P + W ++L G +G GAR+V A GTP V Y + D + Y+++ + Sbjct: 658 PKQAFTAWTTYKLPGGFTIGGGARFVDALHKPKDGAVGTPQFVESYWVYDAMASYEVSKN 717 Query: 770 WSLALNLRNLTNKTYLTNCDTAAATCYYGDQRSILATATYRW 811 SL LNL NL +K Y+ + + + G +RS +A ++ Sbjct: 718 VSLQLNLYNLADKDYVASINKSGYRYTPGIERSARLSANIKF 759 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 159/639 (24%), Positives = 273/639 (42%), Gaps = 50/639 (7%) Query: 125 SAQGSLPTINVSANAESWS-ARTSSSTTKTETPLIEVPQSISVVTAERIAALGATTARDA 183 +++ LP + V +++ES AR +S ++ PL E P SISV+T E++ +A DA Sbjct: 29 TSENVLPEVVVMSDSESDGIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDA 88 Query: 184 LGYTPGVNISPYGADSRYDWINLRGFDA-YSPGFYLDGLPLRNANSFAVWRTENYGIDQI 242 + Y V + Y A DW ++RGF + DG+ + + + E + Sbjct: 89 VKYDASVQ-NAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPMENKERF----- 142 Query: 243 AVLRGPASVLFGQAGPGGVVNVVSKLPSAETQRELQVQLGSNQRRQVGG--DFGGAMDAD 300 VL+G A + G A GG++N V K P+ E R V L +++R + G D GG D D Sbjct: 143 EVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRS--VTLEASERGTLYGAVDLGGRSD-D 199 Query: 301 GKLLYRFIGVIRDAEMPAGGMKNDRIYLAPSLTWKISRDTSLTLQASLLRDNGGVYTRTR 360 + YR D + G +R +++ + W++S +LL+ + + +++ Sbjct: 200 KRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLS-------PKALLQIDLDYHHKSQ 252 Query: 361 PLVGSLVPTPIGTTIPSGL----YIGNPNFDH-FSQNQELLGYRLEHRFNEAVVFRQSAR 415 V IP+G+ + N ++ + + LG + E+ NE A Sbjct: 253 LSVPGFQLLGPAQRIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHTTLQAN 312 Query: 416 VGHMSVDYHALQQPNFITVDATVPNDPANFQSLSRNLFGSRESATMFSIDNQLQLDFSTA 475 + D A+ + + P A+ +L + T+ S LQ F+ Sbjct: 313 KFELRRD-DAVALASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMSTQAMLQGKFNAG 371 Query: 476 GIRHTMLLGVDFQRSRFDALSFSGGSAPLLDIAAPTY------PNGPFVVPAPYNDTRAV 529 I+H + LG+ R + +F SA I P Y P P V ++ R+V Sbjct: 372 TIKHDLTLGMSTMNRRDNYANFLFESAGTGSIYYPKYNPLTLGPTNP-VSLRRKDEERSV 430 Query: 530 LTQTGFYLQDQIKWDNGVELTLGGRHDSADNTVDNRLDGTRTSSTDRKFTA-RAALLYRA 588 Q L D+ K G+ T R + G TD+ F AL++ Sbjct: 431 FVQDVLTLNDKFKLHAGMRYTQLQRTQFTSS-------GGLFRHTDKDFLLPNVALVFSP 483 Query: 589 PNGLAPYVSYTESFNPTATV-DPLTNLP--FGPETGKQTEVGLRYQPSGTRDL-YSAALF 644 + + Y +Y++ P A V L N P +Q E+G++ S +D+ +AALF Sbjct: 484 QSNWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLS--QDISVAAALF 541 Query: 645 DLKRQNYISYDANFMPTQKGEISVRGLELEAVTEPLPSLRLTAAYSYTPRAVVTNSSRPA 704 + R N + N++ K E+ RGLEL A +L L A+ + T +A N+ Sbjct: 542 QIHRDNNYTSGLNYVTAGK-EVH-RGLELSAQGRATRNLTLGASMT-TLQAFAENTGDAR 598 Query: 705 EIGKQATAVPLHQLSLWGDHRLHNGIRLGLGARYVSATS 743 GK+ VP+ + +++ D+ L L L A ++ ++S Sbjct: 599 VEGKRIGNVPVLKSAVFMDYTLPQMPALKLNAMWIYSSS 637 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,556,761 Number of extensions: 67707 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 3 Length of query: 811 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 722 Effective length of database: 707,092 Effective search space: 510520424 Effective search space used: 510520424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)