BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0861.p (241 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 120 7e-29 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 91 8e-20 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 89 2e-19 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 86 2e-18 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 83 1e-17 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 120 bits (300), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 136/244 (55%), Gaps = 9/244 (3%) Query: 1 MQFGGTSVIITGAGKGIGRACARLMAQRGAEVIALSRTASDLESLREEI--GGRSVQVDL 58 ++ G ++TGA +GIGRA A+ +A++G +VI + + S ++ E + G+ V +D+ Sbjct: 4 VELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDV 63 Query: 59 ADPAAA----RRAMAEAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQA 114 D A + E G+ L+N+AGI Q + M D+ +++V+ NL + +A Sbjct: 64 NDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRA 123 Query: 115 FAQARIAAGGGGAIVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNAV 174 + + A G I+NITS+ G G A + YAA+KAG+ G +R LARE+G I VN V Sbjct: 124 VLRGMMKAKHG-RIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCV 182 Query: 175 APTITLTELAEAAWSDPAKSAPMMVRHPLQRFASAEDVARSIAMLLSEDAAMMTGAVVPV 234 AP T++ + S+ SA ++ + PL R ED+A +++ L S A+ +TG + V Sbjct: 183 APGFIDTDMTK-TLSEQQISA-LLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 235 DGGF 238 +GG Sbjct: 241 NGGM 244 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 16/241 (6%) Query: 9 IITGAGKGIGRACARLMAQRGAEVIAL----SRTASDLESLREEIGG--RSVQVDLADPA 62 ++TG G+G A +A G +V+ + TA + + + G R+ D++D Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVSDYD 65 Query: 63 AARRAMA----EAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQAFAQA 118 +A++ +A E G D L+N+AGI + M ++AV+G NL + + Sbjct: 66 SAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPVCDG 125 Query: 119 RIAAGGGGAIVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNAVAPTI 178 + G G I+NI+S+ +G Y+A+KAG+ G T+ LA E+ + VN ++P Sbjct: 126 MVERGWG-RIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISPGY 184 Query: 179 TLTELAEAAWSD--PAKSAPMMVRHPLQRFASAEDVARSIAMLLSEDAAMMTGAVVPVDG 236 T++ A D K P + P+ R E+VA +A L S++AA +TGA + ++G Sbjct: 185 IGTKMVTAIPQDVLDTKIVPQI---PMGRLGKPEEVAGLVAYLASDEAAFVTGANIAING 241 Query: 237 G 237 G Sbjct: 242 G 242 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 22/257 (8%) Query: 5 GTSVIITGAGKGIGRACARLMAQRGAEVI-----ALSRTASDLESLREEIGGRSVQ--VD 57 G + +ITG+ GIG AR +AQ+GA ++ + A+ L ++ G +S D Sbjct: 8 GKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHPAD 67 Query: 58 LADP----AAARRAMAEAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQ 113 ++ P A + A A+ GS D L+N+AGI + + ++A++ +NL +A T + Sbjct: 68 MSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFHTTR 127 Query: 114 AFAQARIAAGGGGAIVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNA 173 A + G I+NI S G G A+ Y A+K G+ G ++V A E G+ NA Sbjct: 128 -LALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTGVTCNA 186 Query: 174 VAPTITLTELA----------EAAWSDPAKSAPMMVRHPLQRFASAEDVARSIAMLLSED 223 + P LT L E +D AK + + P F + E + L SE Sbjct: 187 ICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALAVFLCSEA 246 Query: 224 AAMMTGAVVPVDGGFLA 240 A + GA +DGG+ A Sbjct: 247 ANQVRGAAWSMDGGWTA 263 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 8/186 (4%) Query: 57 DLADPAAARRAMA---EAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQ 113 D+ D A + A+ EAG L+N+AGI+ M+ + +V+ V+L Q Sbjct: 59 DITDAEATKVALETLLEAGPVQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLHGFFNVTQ 118 Query: 114 AFAQARIAAGGGGAIVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNA 173 I G I+N++SIA G + Y+A+K L AT+ LA EL GI VNA Sbjct: 119 PLTMPMIRTRWG-RIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITVNA 177 Query: 174 VAPTITLTELAEAAWSDPAKSAPMMVRHPLQRFASAEDVARSIAMLLSEDAAMMTGAVVP 233 VAP I T + E A+ D A + P++R E+VA I L S +AA ++G ++ Sbjct: 178 VAPGIIATGMIEEAFDDKAIQNIV----PMKRAGKPEEVADLIGFLASPNAAYISGQIIS 233 Query: 234 VDGGFL 239 ++GG + Sbjct: 234 INGGMI 239 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 82.8 bits (203), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 14/175 (8%) Query: 29 GAEVIALSRTASDLESLREEI---GG--RSVQVDLADPAAARRAMA----EAGSADYLIN 79 GA+V+ +R L+ LR EI GG V +D+ D A+ + A+A EAG+ D L+N Sbjct: 3 GAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVN 62 Query: 80 SAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQAFAQARIAAGGGGA-----IVNITSI 134 +AG+ L ++ + Y V+ N R A Q A+ IA G A I+NI S+ Sbjct: 63 NAGVAARGRLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIASV 122 Query: 135 AGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNAVAPTITLTELAEAAWS 189 AG R E Y+ SKA L T+ +A E G GI VNA+ P TEL + + Sbjct: 123 AGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFK 177 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 364,153 Number of extensions: 11529 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 12 Length of query: 241 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 162 Effective length of database: 740,042 Effective search space: 119886804 Effective search space used: 119886804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)