BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0859.p (243 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 76 1e-15 gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrie... 66 2e-12 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 64 8e-12 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 57 1e-09 gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas a... 56 1e-09 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 16/240 (6%) Query: 9 IAVITGAASGIGLATTEKLLANDATVVMVDWNAKALEELAARLGPKAIPQVTNLLDADSC 68 I +ITGA+SG G K V+ L++LAA LG + ++ D S Sbjct: 2 IVLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGAAVLTVAMDVTDKHSI 61 Query: 69 AAMVPEVLQKVAHIDILYCNAGTYIGGELVDT-SAEAIDKMLNLNVNAVMKNVHAVAPHM 127 A + + + ID+L NAG +G T S E + M+ N ++ V P M Sbjct: 62 TAALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQWETMIETNCKGLVTVTRLVLPDM 121 Query: 128 IARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQVSPGPVI 187 + R G II S AG + VY +K + F +R ++ GVR ++PG Sbjct: 122 LKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAPG--- 178 Query: 188 SALLADWPE-ENLR--------KAKESGSLIEPSEVADAVEYMLTRNRNVTIRDMLVLPT 238 LA E N+R K E + P ++AD ++ T +V I + ++PT Sbjct: 179 ---LAGGTEFSNVRLSDDAAAAKVYEGTVPLSPGDIADTAYWIATLPPHVNINHIEIMPT 235 >gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 255 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 9/231 (3%) Query: 12 ITGAASGIGLATTEKLLANDATVVMVDWNAKALEELA--ARLGPKAIPQVTNLLDADSCA 69 + GA++GIG AT +KLLA A V + +A+ E LA A P A+ V +++D S + Sbjct: 15 VIGASTGIGAATAQKLLAQGARVAL---SARRPELLAMVADGHPNALIAVLDIVDHASVS 71 Query: 70 AMVPEVLQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAVMKNVHAVAPHMIA 129 A ++Q+ ID++ AG Y A ++++LN+ + V P ++A Sbjct: 72 AAHTLIMQQWQGIDLVLIIAGGYHEMRADSFDLSAAYRLIDLNIRGTYNCLDLVLPTLLA 131 Query: 130 RKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQVSPGPVISA 189 + G I + SVAG+ +Y +K A+ +++ + P G+ ++PG V + Sbjct: 132 QGNGGIGIVASVAGYSGLPKALIYGPTKAALINLCESLYIDLHPRGIGAYLINPGFVETP 191 Query: 190 LLA--DWPEENLRKAKESGS-LIEPSEVADAVEYMLTRNRNVTIRDMLVLP 237 L A D+P + A E+ L+ E + R N+ +R + +LP Sbjct: 192 LTAGNDFPMPAMISANEAAQELLHGLERGQFHIHFPRRFTNI-LRILRLLP 241 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 63.9 bits (154), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 9/226 (3%) Query: 2 TQSLAGKIAVITGAASGIGLATTEKLLANDATVV---MVDWNAKALEELAARLGPKAIPQ 58 T LAG++A++TGA+ GIG A + L V+ + A A+ E A G + Sbjct: 3 TVELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLD 62 Query: 59 VTNLLDADSCAAMVPEVLQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAVMK 118 V DA A++ E+ ++ + IL NAG + E D ++ N+ +V + Sbjct: 63 VN---DAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGR 119 Query: 119 NVHAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRV 178 AV M+ K G II SV G + YA +K + + + R++ + V Sbjct: 120 LSRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITV 179 Query: 179 GQVSPGPVISALLADWPEENLRKAKES---GSLIEPSEVADAVEYM 221 V+PG + + + E+ + + G L P ++A AV ++ Sbjct: 180 NCVAPGFIDTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFL 225 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 56.6 bits (135), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 7/206 (3%) Query: 4 SLAGKIAVITGAASGIGLATTEKLLANDATVVMVDW-NAKALEELAARL----GPKAIPQ 58 +L GK A+ITG+ SGIGL L A +V+ + +A + L A L G ++ Sbjct: 5 TLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYH 64 Query: 59 VTNLLDADSCAAMVPEVLQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAVMK 118 ++ AAM+ K +DIL NAG ++ D E D ++ +N+++ Sbjct: 65 PADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFH 124 Query: 119 NVHAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRV 178 P M + G II S G + + Y +K I + + GV Sbjct: 125 TTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTGVTC 184 Query: 179 GQVSPGPVISALLADWPEENLRKAKE 204 + PG V++ L+ + ++R A E Sbjct: 185 NAICPGWVLTPLVQ--KQVDVRAANE 208 >gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas arsenicoxydans] Length = 259 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 8/189 (4%) Query: 1 MTQSLAGKIAVITGAASGIGLATTEKLLANDATVVMVDWNAKALEELAARLGPKAIPQVT 60 M + GK A++ GA+ G+G E L A V +V N + LE A + A +T Sbjct: 1 MDLGIKGKTALVCGASRGLGRGCAEALAAEGVHVTLVARNLEVLEATAMDIRSSASGVIT 60 Query: 61 NLLDADSCAAMVPEVLQKVAHI----DILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAV 116 + +C E + HI DIL NAG G+ D + + L+ N+ Sbjct: 61 IV----ACDITTAEGRAQALHICPQPDILVTNAGGPPTGDFHDWTRDDWIAALDANMLTP 116 Query: 117 MKNVHAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGV 176 ++ + A M+AR G II S A P + G++ +T FV + R+ + V Sbjct: 117 IELIKATVDGMMARGFGRIINITSSAVKAPISVLGLSNGARSGLTGFVAGLARKTVAQNV 176 Query: 177 RVGQVSPGP 185 + + PGP Sbjct: 177 TINNLLPGP 185 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 447,836 Number of extensions: 17433 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 8 Length of query: 243 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 164 Effective length of database: 740,042 Effective search space: 121366888 Effective search space used: 121366888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)