BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0857.p (502 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 125 4e-30 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 116 2e-27 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 114 7e-27 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 112 5e-26 gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding pro... 108 4e-25 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 125 bits (314), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 2 LQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRID 61 L ++G++K++G V+R V ++V +GEV LLG NGAGK+T ++ G+V DAG I +D Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 62 GQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLG-LLMRAEMRRRAA 120 G H+ G+ + QE S+ L DN+ EL+ G L + ++ +R Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLD 124 Query: 121 RIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRV 180 ++A L +E + LS +++ VEIA+ALA R ++LDEP A + P V + R+ Sbjct: 125 TLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRI 184 Query: 181 MRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEV 225 +R L+E+G+ ++ H++ E ICDR ++ GA +AS +++ Sbjct: 185 VRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDI 229 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 100/214 (46%), Gaps = 5/214 (2%) Query: 275 FQLRRGEILGFAGLVGSGRTETVLAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLL 334 Q+ GE++G G G+G+T + ++G P+ ++ + GV + + Q G+ L Sbjct: 25 LQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDISRQPIHKRAQLGLSYL 84 Query: 335 PESRKEQGLITSFPILHNISLNNYGKYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHAR 394 P+ E + + NI R G L + + Q + + ++ + Sbjct: 85 PQ---EASVFRKLSVEDNIR-AVLELQRVNGKALSKEQIEQRLDTLLADLQIEKLRENQA 140 Query: 395 VDTLSGGNQQKVVIARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMIS 454 + +LSGG +++V IAR + + + ++ DEP G+D A EI +++R +G +++ Sbjct: 141 L-SLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVRFLKERGIGVLITD 199 Query: 455 SELPEVVGMSDRVCVFKGGGIVATVEGAAVTAAE 488 + E +G+ DR + G ++A+ + A E Sbjct: 200 HNVRETLGICDRAYIINQGAVLASGRPDDIIADE 233 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 11/238 (4%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 +L + + K FG + L V++K+ G+++ L+G NGAGK+T +++G+ D+G + Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLL---------- 110 G+ + H AG+ FQ L + A++N+ + R +R+ GL Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAAR 129 Query: 111 -MRAEMRRRAARIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATL 169 A +R RA ++ +G+ LS Q+ +EIA+ALA + ++L LDEP A + Sbjct: 130 QEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 189 Query: 170 TPAEVEHLFRVMRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQ 227 E L ++ ++ +G I+ I H ++ + +CDRITVL G +A +V + Sbjct: 190 NATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQK 247 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 276 QLRRGEILGFAGLVGSGRTETVLAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLLP 335 ++ +G+I G G G+G+T + G + A + G + P +AGI Sbjct: 32 KIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELAGKAYSPSAPHLVAKAGIARTF 91 Query: 336 ESRKEQGLITSFPILHNISLNNYGKYRKGGLF--LDRRREAQATQAAMRRVGVKAPD--- 390 ++ + G +T+ L N+ + + + +G LF + + A+ +AA+R ++ D Sbjct: 92 QNIRLFGEMTA---LENVMVGRHVRTHQG-LFGAVFHHKAARQEEAAIRARAMELLDFVG 147 Query: 391 ----AHARVDTLSGGNQQKVVIARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQ 446 A LS G+Q+++ IAR + Q+L DEP G++ K + +L+ + A+ Sbjct: 148 IAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKIKAE 207 Query: 447 GYSIIMISSELPEVVGMSDRVCVFKGGGIVA 477 G +I++I ++ V+G+ DR+ V G +A Sbjct: 208 GKTILLIEHDVKLVMGLCDRITVLDYGKPIA 238 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 114 bits (286), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%) Query: 2 LQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRID 61 LQ + FG + V + AG VH+++G NGAGKST + +SG P +G I Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 62 GQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGL---LMRA----- 113 GQ HQ G+ FQ L + ++N+ + + R GL L+R Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 114 EMRRRAAR---IIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLT 170 + RR AA ++ +G++ + L Q+ +EIA+ALA+ ++L+LDEP A LT Sbjct: 468 DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLT 527 Query: 171 PAEVEHLFRVMRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEV 225 E+E L +++R L + ++ + HH++ I + D +TVL G +AS V EV Sbjct: 528 HGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEV 582 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 117/214 (54%), Gaps = 4/214 (1%) Query: 2 LQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRID 61 +++ I K FG L V ++ AGE+ ALLG +G GK+TL++I++G+ PD G++ +D Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAAR 121 G+ S VG VFQ ++L ++ +N+ +R + ++ + + Sbjct: 63 GEDA---SARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTK 119 Query: 122 IIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRVM 181 ++ + ++ D +LS Q+Q + +A+ALA+E R+L+LDEP L + L R + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 182 RGLREQ-GVAIIFISHHLEEIFEICDRITVLRDG 214 R L ++ V IF++H EE E+ D+I ++ G Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLMNKG 213 >gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 306 Score = 108 bits (271), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 8/201 (3%) Query: 17 LRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRIDGQPCRFDSYHQAIAA 76 L+ +++ + GE+ ALLG NGAGK+TL+ I+ GIV+P G + DG D ++A + Sbjct: 21 LKEINLDIRRGEIFALLGPNGAGKTTLINIICGIVNPSTGTVLADGHDIVRD--YRAARS 78 Query: 77 GVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAARIIAQLGVEIALDVPV 136 +G+V QE S DA + ++ G+ + +++ L + D + Sbjct: 79 KIGLVPQELST----DAFETVWATVNFSR--GIFGKPRNHAHIEKVLRSLFLWDKKDAKI 132 Query: 137 CKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRVMRGLREQGVAIIFISH 196 LS ++ V IAKAL+ E +IL LDEPTA + ++ ++RGLR GV II +H Sbjct: 133 FSLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRASGVTIILTTH 192 Query: 197 HLEEIFEICDRITVLRDGAYV 217 ++EE E+ DRI V+R G + Sbjct: 193 YIEEAEEMADRIGVIRKGEII 213 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 16/211 (7%) Query: 275 FQLRRGEILGFAGLVGSGRTETVLAMLG-AHPALRCKLSMRGVPLRFADPAQALQAGIGL 333 +RRGEI G G+G+T + + G +P+ L+ +R +A ++ IGL Sbjct: 26 LDIRRGEIFALLGPNGAGKTTLINIICGIVNPSTGTVLADGHDIVR---DYRAARSKIGL 82 Query: 334 LPESRKEQGLITSFPILHNISLNNYGKYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHA 393 +P+ T + + N S +GK R A + R A Sbjct: 83 VPQELSTDAFETVWATV-NFSRGIFGKPRN-----------HAHIEKVLRSLFLWDKKDA 130 Query: 394 RVDTLSGGNQQKVVIARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMI 453 ++ +LSGG +++V+IA+ ++H Q+L DEPT G+DV + ++++++R A G +II+ Sbjct: 131 KIFSLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRASGVTIILT 190 Query: 454 SSELPEVVGMSDRVCVFKGGGIVATVEGAAV 484 + + E M+DR+ V + G I+ + +A+ Sbjct: 191 THYIEEAEEMADRIGVIRKGEIILVEDKSAL 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 854,440 Number of extensions: 33586 Number of successful extensions: 331 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 57 Length of query: 502 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 416 Effective length of database: 716,977 Effective search space: 298262432 Effective search space used: 298262432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)