BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0854.p
         (238 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094814|ref|YP_001099889.1| putative MgtC/SapB transporter ...    59   2e-10

>gi|134094814|ref|YP_001099889.1| putative MgtC/SapB transporter
           [Herminiimonas arsenicoxydans]
          Length = 146

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 9   LDSLLDTFISLAAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANRLNGHEGA 68
           ++ L    I LAA  +LG +IGL+R+ +   AG+RT + +++G+  F  ++  + G +  
Sbjct: 1   MELLFSGRIVLAA--LLGAVIGLDRERQGSDAGVRTCMAISIGSCAFSLISLHVIGGD-P 57

Query: 69  VHVVAYVVSGVGFLGAGVIMREEGNVRGINTAATLWGSAAVGAAAGADLILEAILATIFV 128
             + A VV+G+GFLGAGVI+   G + G+ TAATLW +A++G A    + + AIL TI +
Sbjct: 58  TRIAAQVVTGIGFLGAGVILHVRGRIEGLTTAATLWATASIGMACAFGMYVLAILTTILI 117

Query: 129 LAANTLLR-PVVNTINRKPLDTPSVEV 154
                L   P      RK     S E 
Sbjct: 118 YGILALRHVPGWKKFTRKQPSPDSSEC 144


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 349,624
Number of extensions: 11579
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 159
Effective length of database: 740,042
Effective search space: 117666678
Effective search space used: 117666678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)