BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0853.p
         (139 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095605|ref|YP_001100680.1| hypothetical protein HEAR2428 [...   125   8e-31

>gi|134095605|ref|YP_001100680.1| hypothetical protein HEAR2428
           [Herminiimonas arsenicoxydans]
          Length = 152

 Score =  125 bits (314), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 92/136 (67%), Gaps = 8/136 (5%)

Query: 3   NLDRLLQWYGTLD-RASLERIGEFYSPEALFKDPFNDIKGIRSIRAIFEHMFEATDAPRF 61
           +L R++Q++ TL   A+  ++ + Y+ +A FKDPF+++ G+ +IR IF HMF   + PRF
Sbjct: 14  SLCRVVQFFETLSIEAAQHQLEQIYAVDASFKDPFSEVCGLPAIRPIFIHMFSQVENPRF 73

Query: 62  IILERMGQGQQAFATWRFEFGLR-----GRCYTVLGATHLRFDAAGLVTEHRDYWDAAEE 116
           ++   + QG  AF TW F F +R      +C  + GATHLRF+A G V  HRDYWDAAEE
Sbjct: 74  VVTNTVLQGDDAFMTWNFLFHMRRYSSDEQC--IRGATHLRFNADGRVNTHRDYWDAAEE 131

Query: 117 LWQKLPVIGGPVRWLR 132
           L++KLP++GG +R L+
Sbjct: 132 LYEKLPLVGGLMRVLK 147


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 288,921
Number of extensions: 11094
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 66
Effective length of database: 759,812
Effective search space: 50147592
Effective search space used: 50147592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)