BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0852.p (283 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrie... 236 8e-64 gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herm... 101 5e-23 gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 65 3e-12 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 63 2e-11 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 57 1e-09 >gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 255 Score = 236 bits (603), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 161/251 (64%) Query: 29 MNQPVSDLRGLRIWLVGASSGIGAELARQALAAGARVALSARRADALQEIAAGHQDAFIA 88 MN +S R+W++GAS+GIGA A++ LA GARVALSARR + L +A GH +A IA Sbjct: 1 MNPQISSWHDKRVWVIGASTGIGAATAQKLLAQGARVALSARRPELLAMVADGHPNALIA 60 Query: 89 PLDVLCHDAWRDQHARVVAAFGGIDLLVFCVAKYRPERSWEVQEDEAEHTIRTNLASVYS 148 LD++ H + H ++ + GIDL++ Y R+ A I N+ Y+ Sbjct: 61 VLDIVDHASVSAAHTLIMQQWQGIDLVLIIAGGYHEMRADSFDLSAAYRLIDLNIRGTYN 120 Query: 149 ALGAALPDMLARGSGGIALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGLNV 208 L LP +LA+G+GGI +VASVAGY GLP A +YGP KAALINL E LY DL P+G+ Sbjct: 121 CLDLVLPTLLAQGNGGIGIVASVAGYSGLPKALIYGPTKAALINLCESLYIDLHPRGIGA 180 Query: 209 YLVNPGFVKTELTDKNDFAMPAMQTPQQAASAIWRGIAEGRFEIHFPLRFTAWLKLLRLL 268 YL+NPGFV+T LT NDF MPAM + +AA + G+ G+F IHFP RFT L++LRLL Sbjct: 181 YLINPGFVETPLTAGNDFPMPAMISANEAAQELLHGLERGQFHIHFPRRFTNILRILRLL 240 Query: 269 PFRLRFLLFQR 279 P+RL F L + Sbjct: 241 PYRLYFWLIHK 251 >gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 101 bits (251), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 11/254 (4%) Query: 34 SDLRGLRIWLVGASSGIGAELARQALAAGARVALSARRADALQEIAAGHQDA---FIAPL 90 + ++ R+++ GASSG+GA LARQ GA + L ARR + L+E+AA +A + L Sbjct: 4 ASMQAKRVFITGASSGLGAALARQYANEGATLGLVARRGEVLRELAASLPNAERHRVYAL 63 Query: 91 DVLCHDAWRDQHARVVAAFGGIDLLVFCVAKYRPERSWEVQED--EAEHTIRTNLASVYS 148 DV H A + A +AA GID+++ R + E ED E TN+ + + Sbjct: 64 DVSNHAALANAAADFIAAAQGIDIVIANAGISRGTLT-EYTEDLHVFEKIFATNVTATVA 122 Query: 149 ALGAALPDMLARGSGGIAL-----VASVAGYVGLPGASVYGPGKAALINLAEILYSDLRP 203 + M A+ + G + SVAG GLPGA Y KAA+I+ E L +L+ Sbjct: 123 TFAPFIATMKAQAAAGQTGARLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELQK 182 Query: 204 KGLNVYLVNPGFVKTELTDKNDFAMPAMQTPQQAASAIWRGIAEGRFEIHFPLRFTAWLK 263 G+ V + PG++ T +T ND+AMP + ++ A IA G P + K Sbjct: 183 DGIKVVTIAPGYIDTPMTQVNDYAMPFLMPVEKFAERGVATIAAGCSYRVIPWQMGVVAK 242 Query: 264 LLRLLPFRLRFLLF 277 +LRLLP L LLF Sbjct: 243 VLRLLPNWLYDLLF 256 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 6/179 (3%) Query: 41 IWLVGASSGIGAELARQALAAGARVALSARRADALQEIAAGHQDAFIA-PLDVLCHDAWR 99 + + GASSG GAE+AR+ G +V + RR D L ++AA A + +DV + Sbjct: 3 VLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGAAVLTVAMDVTDKHSIT 62 Query: 100 DQHARVVAAFGGIDLLVFCVA---KYRPERSWEVQEDEAEHTIRTNLASVYSALGAALPD 156 + A + ID+L+ P ++ +++ E I TN + + LPD Sbjct: 63 AALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQ--WETMIETNCKGLVTVTRLVLPD 120 Query: 157 MLARGSGGIALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGLNVYLVNPGF 215 ML R G I + S AG PGA+VYG KA + L +DL G+ + PG Sbjct: 121 MLKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAPGL 179 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 10/173 (5%) Query: 61 AGARVALSARRADALQE----IAAGHQDAFIAPLDVLCHDAWRDQHARVVAAFGGIDLLV 116 AGA+V L+ARR D L+E I A A + LDV + + + A G ID+LV Sbjct: 2 AGAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILV 61 Query: 117 FCVAKYRPERSWEVQEDEAEHTIRTNLASVYSALGAALPDMLARGSGG------IALVAS 170 R +V +E + + TN + M+AR G I +AS Sbjct: 62 NNAGVAARGRLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIAS 121 Query: 171 VAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGLNVYLVNPGFVKTELTDK 223 VAG +P Y KAAL+++ + + + G+NV + PG++ TEL + Sbjct: 122 VAGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQE 174 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 9/192 (4%) Query: 35 DLRGLRIWLVGASSGIGAELARQALAAGARV---ALSARRADALQEIAAGHQDAFIAPLD 91 +L G + GAS GIG +A+ G +V A S A A+ E A + LD Sbjct: 5 ELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVV--LD 62 Query: 92 VLCHDAWRDQH--ARVVAAFGGIDLLVFCVAKYRPERSWEVQEDEAEHTIRTNLASVYSA 149 V +DA R + FG + +LV + + + ++++E + I TNL SV Sbjct: 63 V--NDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRL 120 Query: 150 LGAALPDMLARGSGGIALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGLNVY 209 A L M+ G I + SV G G G Y KA + ++ L ++ + + V Sbjct: 121 SRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 210 LVNPGFVKTELT 221 V PGF+ T++T Sbjct: 181 CVAPGFIDTDMT 192 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 440,918 Number of extensions: 16438 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 7 Length of query: 283 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 202 Effective length of database: 733,452 Effective search space: 148157304 Effective search space used: 148157304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)