BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0849.p
         (287 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095599|ref|YP_001100674.1| hypothetical protein HEAR2422 [...   192   2e-50

>gi|134095599|ref|YP_001100674.1| hypothetical protein HEAR2422
           [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  192 bits (487), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/266 (45%), Positives = 151/266 (56%), Gaps = 24/266 (9%)

Query: 13  ALLLSGQVMHQRLRPVVHKFVYPVFCVRLDLARLAEANNA---WFGVDRRRLMCVRTRDY 69
           A L  G+VMH RLRP  H F Y V+ +RL L  +A+       +F  +R  ++     D+
Sbjct: 8   AQLCFGKVMHTRLRPTRHAFNYGVYFIRLPLRAMAQDAVQPARFFSHNRFNVLSFWDSDH 67

Query: 70  GPRDGSD-LSRWVRTHLQQAGLPQ-DGAIWLQTFPRLFGFVFNPVSFFLCHDREGALRAV 127
           G  DG   L  W+   L+  G+   DG IWLQ FPR+ G+VFNPVSF+ CH ++G LRAV
Sbjct: 68  G--DGRQPLLEWLDALLKNEGIDDADGEIWLQAFPRVLGYVFNPVSFWFCHRKDGQLRAV 125

Query: 128 LAEVNNTFGQTQHYLLCAPDQG-AIGEHTRLVCNKLMHVSPFCEVRGFYRFRFRDQVRR- 185
           LAEV NTFG+   YLL   D G A+     L   K+ HVSPFC V G YRFRF    +  
Sbjct: 126 LAEVCNTFGERHLYLL---DTGSAMNYGIELTARKIFHVSPFCAVDGCYRFRFLCITQEI 182

Query: 186 DATRADTAFVGIDYYDHGHPAEAMQPQQPQQPLIRTAIGGHLHPLTAASAFAALCAQPLL 245
           D T  +     ID+ D+              PLI T+I G  +PL+ A    A C  PL+
Sbjct: 183 DGTVVERNVARIDHDDN------------SGPLILTSIAGSAYPLSDALVARAFCLYPLM 230

Query: 246 TLGVVARIHWQALLLWRKRVPWFSKP 271
           TLGVVA+IHWQAL LW KRVP+F KP
Sbjct: 231 TLGVVAKIHWQALRLWLKRVPFFRKP 256


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 551,119
Number of extensions: 21468
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 206
Effective length of database: 733,452
Effective search space: 151091112
Effective search space used: 151091112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)