BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0848.p
         (436 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095598|ref|YP_001100673.1| putative dehydrogenase [Hermini...   404   e-114

>gi|134095598|ref|YP_001100673.1| putative dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 432

 Score =  404 bits (1039), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/425 (51%), Positives = 275/425 (64%), Gaps = 10/425 (2%)

Query: 15  RIAVIGAGISGLASAYLLARR-HQVVLYEAAPTLGGHANTVDIAPQGVPFAVDTGFLVFN 73
           +IAVIG+GI+GL+ AY L +  + V L+EA    GGH +TVD+    V + VDTGFLVFN
Sbjct: 2   KIAVIGSGIAGLSCAYRLVQSGYDVTLFEANDYFGGHTHTVDVTLDDVTYGVDTGFLVFN 61

Query: 74  DWTYPNLIALFDELKVDTCDTDMSFGVSMD-EG-AFEWAGTNLDTVFAQRKRLLQPAFLG 131
             TYP+L+ LF EL+V+T  TDMSF V +  +G   EWAG+NLD VFAQR+ LL P F  
Sbjct: 62  HHTYPHLVRLFAELEVETVATDMSFSVKLPLQGRMLEWAGSNLDAVFAQRRNLLNPRFHR 121

Query: 132 MLRDILRFNRAAHANLA---ACQARPVSLRQLLQEGGYGALFSDAYLIPMAAAIWSSSPS 188
           MLRDILRFN+ A   LA   A  A   SL   L +  Y   F D YL+PMA  IWS    
Sbjct: 122 MLRDILRFNKHA-TKLALSRAHDASHCSLGAYLDKHNYSKEFRDWYLLPMAGCIWSCPTE 180

Query: 189 DILDFPAATFLRFCINHGLLQVNHRPRWRTVRGGSREYVRRIAATLDDVRLGSRLSSVTR 248
            +L FP ++F+RFC NHGLLQVN RP+W+TV+GG+R YV ++ A +    L + + SVTR
Sbjct: 181 QMLAFPLSSFVRFCHNHGLLQVNDRPQWQTVKGGARHYVEKMLAQIPQKFLNTPVLSVTR 240

Query: 249 NQQGVLVRSAGPAPREEQF-DAVVFATHAPQTLALLQDATIEEHQVLAAVRYQANTAWLH 307
           N  G + +    A       D VV A+H+ Q+L LL+DAT+ E  +L+A++YQ N A LH
Sbjct: 241 NTLGNVTKIKIEAGNGIHLVDHVVIASHSDQSLQLLKDATMYEQAILSAIKYQPNRAVLH 300

Query: 308 SDLSLMPRLDKVWSAWNYLGARHSDGRRAVCVSYWLNRLQDLPCQSEVILTLNPPQPPNS 367
            D   +P   K W+AWNY   + S+ R  VCV Y LN+LQ LP +  VI++LNP   PN 
Sbjct: 301 LDTDCLPANKKTWAAWNYQSEQGSEPR--VCVHYLLNQLQPLPFKQSVIVSLNPIHAPNP 358

Query: 368 ASVMGRFDYEHPVFDQAAIDAQQRLPQIQGRQRAWFAGAWTGYGFHEDGLKSALRVVQDF 427
            SV+  +DY HPVFD+AAI AQ +L  IQG Q  WFAGAWTGYGFHEDGLKS L V Q  
Sbjct: 359 NSVLASYDYAHPVFDEAAIVAQGKLATIQGEQNTWFAGAWTGYGFHEDGLKSGLSVAQAI 418

Query: 428 GVMPD 432
           G + D
Sbjct: 419 GSVVD 423


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 899,682
Number of extensions: 38284
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 352
Effective length of database: 723,567
Effective search space: 254695584
Effective search space used: 254695584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)