BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0843.p (515 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 119 4e-28 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 119 5e-28 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 113 2e-26 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 107 2e-24 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 105 5e-24 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 13/249 (5%) Query: 18 LIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 77 ++ + NVSKRF G+ AL + ++ G+++ L+G NGAGK+T +++G+YQ DSG L Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 78 DGKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKG---FGLIIDEDQLN 134 GK P GI Q + L ++A +N+ +GR R FG + Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAAR 129 Query: 135 RQAAAIFERMRLDMD--------PRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAA 186 ++ AAI R +D RT L+ Q+ +EIA+AL+ D ++L +DEP A Sbjct: 130 QEEAAIRARAMELLDFVGIAQFAGRT-ARHLSYGDQRRLEIARALATDPQLLALDEPAAG 188 Query: 187 LNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIAT-VPMQGTSM 245 +N E L ++ ++A+G I+ I H + + + DR++V+ GK IA VP Sbjct: 189 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKN 248 Query: 246 DTIISMMVG 254 +I +G Sbjct: 249 PAVIEAYLG 257 Score = 68.2 bits (165), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 283 RAIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFIHGGKAMIRQPADAV 342 +A+ DV+ ++ +G+I G G GAG+T I G DSG + G P Sbjct: 24 QALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELAGKAYSPSAPHLVA 83 Query: 343 AHGIGYLSEDRKHFG-------LAVGMDVQANIALSSMGRFTRAGFMDQRAMREVAQAYV 395 GI ++ + FG + VG V+ + L +A ++ A+R A + Sbjct: 84 KAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQEEAAIRARAMELL 143 Query: 396 RQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYKLLD 455 + I + + AR LS G+Q+++ IA+ L D +L DEP G++ K + +LL Sbjct: 144 DFVGIAQFA-GRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLV 202 Query: 456 ALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELARADATQEN 502 + +GK I++I ++ V+ + RI V+ G+ E AD Q+N Sbjct: 203 KIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPAD-VQKN 248 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 11/248 (4%) Query: 1 MQQDQETQAKA-AASAPPLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKST 59 + D E K+ A+ + ++++ F G++A D L AG VH+++G NGAGKST Sbjct: 329 VNADTEALLKSDTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKST 388 Query: 60 LMKILSGVYQRDSGDILLDGKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGRE 119 + +SG Y+ SG I G+ + Q +G+ Q L ++ +N+ +G + Sbjct: 389 FINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGAD 448 Query: 120 PRKGFGLII----------DEDQLNRQAAAIFERMRLDMDPRTPVGELTVARQQMVEIAK 169 R GL DE + +A + E + LD L Q+ +EIA+ Sbjct: 449 SRYRSGLFATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIAR 508 Query: 170 ALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVM 229 AL+ ++L++DEP A L + EI +L ++IR+L + + ++ + H +D + ++D V+V+ Sbjct: 509 ALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVL 568 Query: 230 RDGKYIAT 237 GK IA+ Sbjct: 569 DYGKVIAS 576 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 123/216 (56%), Gaps = 7/216 (3%) Query: 19 IALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLD 78 I ++N++K+F +AL++ E AGE+ AL+G +G GK+TL++I++G+ Q D G +LLD Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 79 GKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLNRQAA 138 G+ R+ Q +G + Q L H++ +NI G R E + + Sbjct: 63 GEDASARHVRERQ---VGFVFQHYALFKHMTVFENIAFGLRVRPA-ATRPSESVIKEKVT 118 Query: 139 AIFERMRLD-MDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFR 197 + E ++LD + R P +L+ ++Q + +A+AL+ + RVL++DEP AL+ EL R Sbjct: 119 KLLELVQLDWLADRYP-PQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 198 IIRDLQAQ-GVGIVYISHKMDELRQIADRVSVMRDG 232 +R L + V ++++H +E ++AD++ +M G Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKG 213 Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 27/228 (11%) Query: 274 LEVRGLNRGR----AIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFIH 329 +EV+ +N+ A+ DVS + GE+ G G G+T + R I G + D G++ + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 330 GGKAMIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFMDQRAMRE 389 G A R + +G++ + H+ L M V NIA G + A Sbjct: 63 GEDASARHVRE---RQVGFVFQ---HYALFKHMTVFENIAF---------GLRVRPAATR 107 Query: 390 VAQAYVRQLAIKTPSVEQQARL-------LSGGNQQKIVIAKWLLRDCDILFFDEPTRGI 442 +++ +++ K + Q L LSGG +Q+I +A+ L + +L DEP + Sbjct: 108 PSESVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGAL 167 Query: 443 DIGAKSEIYKLLDALAEQGKAI-VMISSELPEVLRMSHRILVMCEGRV 489 D + E+ + L L ++ + ++ + E L ++ +I++M +G V Sbjct: 168 DAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHV 215 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 128/507 (25%), Positives = 224/507 (44%), Gaps = 61/507 (12%) Query: 15 APPLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGV--YQRDS 72 A P+I L ++ R+ +AL + ++ A + L+G +G GKS+L+ + +G Q+ S Sbjct: 5 ALPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGS 64 Query: 73 GDILLDGKPVEIGEPRQAQALGIGIIHQEL--NLMNHLSAAQNIFIGREPRKGFGLIIDE 130 D+L G + R A I + Q L NL LS +N+ + F + Sbjct: 65 ADVL--GGDMRRKRHRDAVCPRIAYMPQGLGKNLYPTLSVEENL-------QFFARLFGH 115 Query: 131 DQLNRQAAAIFERMRLDMDPRT---------PVGELTVARQQMVEIAKALSFDSRVLIMD 181 D R R R+D R+ PVG+L+ +Q + + AL D +LI+D Sbjct: 116 DAAER-------RRRIDSLTRSTGLFPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLILD 168 Query: 182 EPTAALNNAEIAELFRIIRDLQAQ--GVGIVYISHKMDELRQIADRVSVMRDGKYIAT-- 237 EPT ++ A+ + +I ++ Q + ++ + MDE Q D + M G+ +AT Sbjct: 169 EPTTGVDPLARAQFWSLIAGIRQQRPQISVIVATAYMDE-AQGFDWLVAMDGGRVLATGA 227 Query: 238 ---VPMQGTSMD---TIISMMVGRALDGEQRTPPDT----SRNEVVLEVRGLNR----GR 283 + Q S D I+++ G Q + EV +E R L Sbjct: 228 PQELLAQTGSADLEAAFIALLPEEKKRGHQAVEIQPLALGADAEVAIEARDLTMRFGDFT 287 Query: 284 AIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFIHGGKAMIRQPAD-AV 342 A+ V+F++RRGEI GF G G G+T + + G G ++ G + P D A Sbjct: 288 AVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLFGHEV---DPHDIAT 344 Query: 343 AHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFMDQRAMREVAQAYVRQLAIKT 402 +GY+S+ F L + V N+ L + R + + + AQ + + ++ Sbjct: 345 RRRVGYMSQS---FSLYSELSVMQNLVLHA-----RLFNVPEAEVAARAQQMLTRFGLEE 396 Query: 403 PSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYKLLDALAEQGK 462 ++ L G +Q++ +A ++ ++L DEPT G+D A+ ++LL L+ + + Sbjct: 397 -EIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSRRDR 455 Query: 463 AIVMISSELPEVLRMSHRILVMCEGRV 489 + IS+ RI +M G+V Sbjct: 456 VTIFISTHFMNEAERCDRISLMHAGKV 482 Score = 82.0 bits (201), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 112/223 (50%), Gaps = 15/223 (6%) Query: 19 IALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLD 78 I R+++ RF A+D+ F + GE+ +G NG GK+T MK+L+G+ G L Sbjct: 274 IEARDLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLF 333 Query: 79 GK---PVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLNR 135 G P +I R+ +G + Q +L + LS QN+ + + F + E ++ Sbjct: 334 GHEVDPHDIATRRR-----VGYMSQSFSLYSELSVMQNLVLH---ARLFN--VPEAEVAA 383 Query: 136 QAAAIFERMRLDMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAEL 195 +A + R L+ + +L + +Q + +A A+ +LI+DEPT+ ++ Sbjct: 384 RAQQMLTRFGLEEEIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNF 443 Query: 196 FRIIRDLQAQGVGIVYIS-HKMDELRQIADRVSVMRDGKYIAT 237 +R++ +L + ++IS H M+E + DR+S+M GK + + Sbjct: 444 WRLLIELSRRDRVTIFISTHFMNEAER-CDRISLMHAGKVLVS 485 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 9/205 (4%) Query: 265 PDTSRNEVVLEVRGLNRGR--AIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLD 322 PD + + L GL G+ A+ D+S + ++G G G G++ + GA + Sbjct: 2 PDMALPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQ 61 Query: 323 SGEIFIHGGKAMIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFM 382 G + GG ++ DAV I Y+ + L + V+ N+ F R Sbjct: 62 QGSADVLGGDMRRKRHRDAVCPRIAYMPQGLGK-NLYPTLSVEENLQF-----FARLFGH 115 Query: 383 DQRAMREVAQAYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGI 442 D R + R + P + + LSGG +QK+ + L+ D D+L DEPT G+ Sbjct: 116 DAAERRRRIDSLTRSTGL-FPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGV 174 Query: 443 DIGAKSEIYKLLDALAEQGKAIVMI 467 D A+++ + L+ + +Q I +I Sbjct: 175 DPLARAQFWSLIAGIRQQRPQISVI 199 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 9/221 (4%) Query: 18 LIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 77 +I ++NVSK + L++C +A G+V + G +G+GKSTL+K ++G+ G I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 78 DGKPVEIGEPRQ---AQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLN 134 DG + +G+P+ A IG++ Q L HLS +N+ +G+ G E++ Sbjct: 61 DG--ISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRS----EEEAA 114 Query: 135 RQAAAIFERMRLDMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAE 194 + +R+ L G+L+ +QQ V IA+AL+ D ++ DEPT+AL+ I E Sbjct: 115 ERGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINE 174 Query: 195 LFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYI 235 + ++ L G+ ++ ++H+M R++A+RV M G + Sbjct: 175 VLDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIV 215 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/219 (21%), Positives = 106/219 (48%), Gaps = 19/219 (8%) Query: 283 RAIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFIHG---GKAMIRQPA 339 + + D + + +G+++ G G+G++ + + + G +P G I + G G PA Sbjct: 15 QVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVDGISVGDPKTNLPA 74 Query: 340 DAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFMDQRAMREVAQAYVRQLA 399 G+ + ++F L + ++ N+ L + R+ + E Y+ ++ Sbjct: 75 LRSRIGMVF-----QNFELFPHLSIRENLTLGQIRVLGRS----EEEAAERGLKYLDRVG 125 Query: 400 IKTPSVEQQARL---LSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYKLLDA 456 + + Q+ + LSGG QQ++ IA+ L D + FDEPT +D +E+ ++ Sbjct: 126 L----IAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMVG 181 Query: 457 LAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELAR 495 LA+ G +++++ E+ ++++R++ M +G + + + Sbjct: 182 LAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTK 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 913,359 Number of extensions: 39846 Number of successful extensions: 357 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 286 Number of HSP's successfully gapped: 75 Length of query: 515 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 429 Effective length of database: 716,977 Effective search space: 307583133 Effective search space used: 307583133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)