BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0841.p (258 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 85 3e-18 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 84 5e-18 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 82 2e-17 gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm... 75 2e-15 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 73 1e-14 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 7 EKVVIVTGGASGIGGAISMQLAAEG-AIPVVFARSEPEPQFWSRLTALQPRAAWFQLELQ 65 +K +V+GG G+G AI++ L + G A+ V + + + + T++ P W ++ Sbjct: 2 KKTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRKNTSI-PVFCW---DVS 57 Query: 66 DAARCGEAVAQTVARFGRLDGLVNNAGVN-DSVGLDAGRDEFVASLERNLIHYYVMAHYC 124 D A+C E + Q G +D LVNNAG+ D+V +++ + NL + M+ Sbjct: 58 DYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNV 117 Query: 125 VPHLKATR-GAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRVNALIP 183 + ++ G I+N+SS GQ + Y A+K T+ A + VNA+ P Sbjct: 118 IEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAP 177 Query: 184 AEVMTPLYEKWIATFEHPQEKLDAITSKIPLGKRFTTSEEMADMAVFLLSGRSSHTTGQW 243 T + PQE L+ I + IP+G T ++A + VFL S TG Sbjct: 178 GYCDTDMVSAI------PQEVLEKIVTGIPVG-HLGTGSDIARLVVFLADNASGFITGAT 230 Query: 244 VFVDGG 249 V+GG Sbjct: 231 FDVNGG 236 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 84.3 bits (207), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 16/263 (6%) Query: 2 DLNLQEKVVIVTGGASGIGGAISMQLAAEGAIPVV--FARSEPEPQFWSRLTALQPRAAW 59 + LQ K ++TG SGIG I+ LA +GA V+ F + + LT Q Sbjct: 3 NTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLT--QDYGVQ 60 Query: 60 FQLELQDAARCGEAVAQ---TVARFGRLDGLVNNAGVNDSVGL-DAGRDEFVASLERNLI 115 D +R E A A+FG +D LVNNAG+ + D +++ A + NL Sbjct: 61 STYHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLS 120 Query: 116 HYYVMAHYCVPHLKATR-GAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDD 174 + +P +K G I+N++S L G S Y A+K + L++ A Sbjct: 121 SAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQT 180 Query: 175 GVRVNALIPAEVMTPLYEKWIAT------FEHPQEKLDAITSKIPLGKRFTTSEEMADMA 228 GV NA+ P V+TPL +K + + K + K P G+ F T E++ +A Sbjct: 181 GVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGE-FVTPEQLGALA 239 Query: 229 VFLLSGRSSHTTGQWVFVDGGYT 251 VFL S ++ G +DGG+T Sbjct: 240 VFLCSEAANQVRGAAWSMDGGWT 262 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 82.4 bits (202), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 11/249 (4%) Query: 3 LNLQEKVVIVTGGASGIGGAISMQLAAEGAIPVVFARSEPEPQFWSRLTALQPRAAWFQL 62 + L +V +VTG + GIG AI+ LA +G + A SE S A + L Sbjct: 4 VELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVV--L 61 Query: 63 ELQDAARCGEAVAQTVARFGRLDGLVNNAGVN-DSVGLDAGRDEFVASLERNLIHYYVMA 121 ++ DAAR + + FG + LVNNAG+ D + + +E+ + + NL ++ Sbjct: 62 DVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLS 121 Query: 122 HYCV-PHLKATRGAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRVNA 180 + +KA G I+N++S TG Y A+K ++R A + + VN Sbjct: 122 RAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 181 LIPAEVMTPLYEKWIATFEHPQEKLDAITSKIPLGKRFTTSEEMADMAVFLLSGRSSHTT 240 + P + T + + ++++ A+ ++PLG R E++A FL S ++S+ T Sbjct: 182 VAPGFIDTDMTKTL------SEQQISALLQQVPLG-RLGVPEDIAAAVSFLASPQASYIT 234 Query: 241 GQWVFVDGG 249 G + V+GG Sbjct: 235 GTTLHVNGG 243 >gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 249 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 25/259 (9%) Query: 5 LQEKVVIVTGGASGIGGAISMQLAAEG-AIPVVFARSEPEPQF---WSRLTALQPRAAWF 60 + +KV+IVTGG+ GIG I+ A +G A+ + + ++ RLT A Sbjct: 1 MSKKVMIVTGGSRGIGAEIAKLGAIDGYAVCISYLHNKTAADAIVDLIRLTGGTAMAVAA 60 Query: 61 QLELQ-DAARCGEAVAQTVARFGRLDGLVNNAGVNDSV----GLDAGRDEFVASLERNLI 115 + ++ D R E V + G L LVNNAG+ + +DA R + + N++ Sbjct: 61 DMAVEADILRMFETVDR---ELGPLTALVNNAGILEQQMRVDQMDAARMQRI--FTTNIV 115 Query: 116 HYYVMAHYCVPHLKATRG----AILNVSSKTALTG-QGNTSGYCASKGAQLSLTREWAAA 170 ++ A V + G AI+NVSS A TG G Y ASKGA +LT A Sbjct: 116 GSFLCAREAVRRMSTLHGGAGGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAKE 175 Query: 171 LRDDGVRVNALIPAEVMTPLYEKWIATFEHPQEKLDAITSKIPLGKRFTTSEEMADMAVF 230 + +G+RVNA+ P + T ++ A+ P ++D + +P+ +R + E+A ++ Sbjct: 176 VATEGIRVNAVRPGVIYTEIH----ASGGEPG-RVDRVKGNVPM-QRGGEANEVAQAVLW 229 Query: 231 LLSGRSSHTTGQWVFVDGG 249 LLS ++S+TTG + V GG Sbjct: 230 LLSDKASYTTGTLLDVTGG 248 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 16/249 (6%) Query: 8 KVVIVTGGASGIGGAISMQLAAEG-AIPVVFARSEPEPQFW---SRLTALQPRAAWFQLE 63 ++ +VTGG G+G AI ++LAA G + ++ S W + + RA + + Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRA--YPCD 60 Query: 64 LQDAARCGEAVAQTVARFGRLDGLVNNAGVN-DSVGLDAGRDEFVASLERNLIHYYVMAH 122 + D + VA G +D LVNNAG+ D + ++ A + NL + M Sbjct: 61 VSDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTK 120 Query: 123 -YCVPHLKATRGAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRVNAL 181 C ++ G I+N+SS A G + Y A+K T+ A + V VN + Sbjct: 121 PVCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 182 IPAEVMTPLYEKWIATFEHPQEKLDA-ITSKIPLGKRFTTSEEMADMAVFLLSGRSSHTT 240 P + T + PQ+ LD I +IP+G R EE+A + +L S ++ T Sbjct: 181 SPGYIGTKMVTAI------PQDVLDTKIVPQIPMG-RLGKPEEVAGLVAYLASDEAAFVT 233 Query: 241 GQWVFVDGG 249 G + ++GG Sbjct: 234 GANIAINGG 242 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 467,860 Number of extensions: 17735 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 64 Number of HSP's successfully gapped: 9 Length of query: 258 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 178 Effective length of database: 736,747 Effective search space: 131140966 Effective search space used: 131140966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)