BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0838.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093499|ref|YP_001098574.1| putative gluconolactonase with ...   168   3e-43

>gi|134093499|ref|YP_001098574.1| putative gluconolactonase with
           senescence marker [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  168 bits (425), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 151/292 (51%), Gaps = 10/292 (3%)

Query: 2   NAQLLVDGHHELGEGVLWCERSQSLFWTDIHASRLWNHDPHSGATRSWSMPERLCCFAFT 61
           N Q ++    +LGE  LW  +  +L+W DI    +    P  GA   W+MP    C A  
Sbjct: 5   NIQAILPTRMQLGECPLWHAQQAALYWIDIDGCAIHRFHPAHGAHHVWTMPSEPGCIAIN 64

Query: 62  ADPERLLIGLESRLAFFNLNTAAITPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDAS 121
           A    L++ L S LA  + +   +T I     D  STR NDGRCD  GR   G++ E   
Sbjct: 65  AS-GGLIVALRSGLALLDTDNGQLTTIAAAPYDPASTRFNDGRCDAAGRLWVGSIYEPRD 123

Query: 122 REPIASFYRLNADLSLERLALPGIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDPASGA 181
             P A+ Y +  +  L R +     +SN + FS D K +YH D+ + +I   +YD A+GA
Sbjct: 124 -HPHAALYCI--ERGLIRDSGKRATVSNGVAFSPDNKTLYHADTTSHRISAYEYDVATGA 180

Query: 182 VSGQRVFA-----DLAQQPGGPDGSTVDAEGYVWNAQWGGSRVVRFAPDGVIDRIIDLPT 236
           +SG R+        L    G PDG+ VD+EG  W A + G +++R +PDG + R I LP 
Sbjct: 181 ISGTRLLKQFSTDKLNNYGGRPDGAAVDSEGAYWCAMYEGGKILRLSPDGEVLREIPLPV 240

Query: 237 AQPSCVAFGGAALDTLFVTTAHEGMSAQQRAQDALAGAVFAVPQVGVRGLPE 288
             P+ +AFGG  L TL++TT  +   A +  Q  L+G V ++ ++ V GL E
Sbjct: 241 RCPTMLAFGGDDLRTLYITTVSKNRPAAELKQFPLSGCVLSL-RIDVAGLVE 291


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 609,297
Number of extensions: 25932
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)