BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0837.p (354 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 94 1e-20 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 90 1e-19 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 74 1e-14 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 62 6e-11 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 122/384 (31%), Positives = 167/384 (43%), Gaps = 67/384 (17%) Query: 1 MGAFSAQAQAQSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASNQWGTSMIGFKGT 60 +GAF+ A AQSSVT+YG V G+ ++ G+G S S IGFKGT Sbjct: 11 LGAFAGAASAQSSVTVYGIVDMGI-----TSQDTGAGANDRLNGVTSGNQSASRIGFKGT 65 Query: 61 EDLGGGTNAFFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGKNLFIN 120 EDLG G A F+LE + TG L + V+G + FNR + VGL S N G + LG+ + Sbjct: 66 EDLGNGLKANFVLEQTIAADTGVL--SQVDGKTAFNRFATVGL-SGNFGAVNLGRQVSAI 122 Query: 121 NDVW-FLDPTGQ-------QWIGTANLVRGRNWPGASNVIEYTTPTYGGFGATLQTSLGE 172 D + +DP G I ++G N SN I+YT+ +Y GF + GE Sbjct: 123 KDAYDAIDPFGDGGTIAPISAIFFNAALKGDNGR-ISNSIKYTSNSYSGFKFGAHYAFGE 181 Query: 173 AAGSFSKGGTSTKYGRKDGLSLVYQNNGLELRGIY----DVVRDPNGRYTDVYDTSKELI 228 AG + G + Y GL+L Y N L ++ Y D G K Sbjct: 182 QAG---RTGADSNY----GLNLGYANGPLNVQFGYMSGDDSTAGAPGFKPVKNSKDKMTF 234 Query: 229 LGGTYKIDKLKLFLGYENLRAPDVNPASGAPD-RVNHYWLGANYDVTSQLQLVGSVFH-- 285 LG TY KL Y + + P +G D + +Y LG V++++ GS+ Sbjct: 235 LGATYDFGVAKLHAAYGDSKN---QPVAGNVDNKYRNYMLG----VSAKVGAAGSIMASY 287 Query: 286 ----------VNANNGNGSANLFMAGVNYF--LSKRTLLYVGAGTMRNGNNANY-SLEAD 332 V AN+ + AG+ Y LSKRT LY G N NA +L AD Sbjct: 288 TVNDTRTFGGVKANDRDSK----RAGIMYAHDLSKRTNLYAGYSHTSNDKNAKLNALVAD 343 Query: 333 SSTGGGKGTNQTGGYF--GIAHSF 354 Q+G F G+ H F Sbjct: 344 ----------QSGSMFAVGVRHKF 357 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 104/367 (28%), Positives = 157/367 (42%), Gaps = 55/367 (14%) Query: 10 AQSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASN-QWGTSMIGFKGTEDLGGGTN 68 A SS+++YG + +G+ +TN + GS T + SN ++ + +G KG E+LGGG N Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTT-----KLGSNGEYYNNRLGIKGMENLGGGLN 84 Query: 69 AFFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGKNLFI-NNDVWFLD 127 F LESGF + TG L D LFNR S +G+ + + G+L G+ + V+ + Sbjct: 85 MHFHLESGFNTGTGEL---DNKANRLFNRISSIGI-AGSFGSLDFGRQPSVACKAVYAYE 140 Query: 128 PTGQQWIGTANL-------VRGR--------NWPGASNVIEYTTPTYGGFGATLQTSLGE 172 P +++ L + GR + P SN +Y +G F A+ + +GE Sbjct: 141 PFQYRYVHIIPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFG-KFGSFTASAEYIMGE 199 Query: 173 AAGSFSKGGTSTKYGRKDGLSLVYQNNGLELRGIYDVVRDPN--GRYTDVYDTSKELILG 230 G S + + LVY + + G Y ++PN Y + G Sbjct: 200 VPG-------SNRNQAAKAVGLVYNDGTFTVGGAY-TRQNPNIGTVAASDYREQNQTTFG 251 Query: 231 GTYKIDKLKLFLGYENLRAPDVNPASGAPDRVNHYWLGANYDVTSQLQLVGSVFHV---N 287 G YKID L++ GY + + + + WLGA YD T L + Sbjct: 252 GGYKIDALRITGGY-------LKTTTAITSQAKNIWLGARYDFTPAASLTAGYYRTTLET 304 Query: 288 ANNGNGSANLFMAGVNYFLSKRTLLYVGAGTMRNGNNANYSLEADSSTGGGKGTNQTGGY 347 A + NL + G Y LS RT LY + L +S G T QTG Sbjct: 305 AQSEIARRNLLIVGATYALSPRTSLYA--------DIDQAVLHGLASLPSGSQTRQTGIS 356 Query: 348 FGIAHSF 354 GI+H F Sbjct: 357 AGISHIF 363 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 94/195 (48%), Gaps = 30/195 (15%) Query: 8 AQAQSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASNQWGTSMIGFKGTEDLGGGT 67 A AQ+ VTIYG D+ N G G + T +RS + S IGFKGTEDLGGGT Sbjct: 23 AGAQNGVTIYGIA----DVAMVYSSNQG-GASNTYMRSGN--LAGSRIGFKGTEDLGGGT 75 Query: 68 NAFFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGKNLFINNDVWFLD 127 A F LESGF TG ++ + ++LFNR+++VG+++ G L G+ F+ Sbjct: 76 QAIFQLESGFNLDTGEMSSS----STLFNRQAFVGINNTRYGALTAGRQY--TPYYLFVG 129 Query: 128 PTGQQWIGTANLVRGRN--WPG----------ASNVIEYTTPTYGGFGATLQTSLGEAAG 175 P IG N + G PG ++N I YT+P + G + GE AG Sbjct: 130 P-----IGPTNSLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAG 184 Query: 176 SFSKGGTSTKYGRKD 190 G T + + D Sbjct: 185 DMGSGRTISAAIKYD 199 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 61.6 bits (148), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 142/358 (39%), Gaps = 58/358 (16%) Query: 4 FSAQAQAQSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASNQWGTSMIGFKGTEDL 63 FS A AQSSV G V A + N SG G++ S+ TS G KGTE+L Sbjct: 22 FSLNALAQSSVQFVGTVDAFAGSLKN------SGDAGSKSVVNSSGMETSWWGVKGTENL 75 Query: 64 GGGTNAFFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGKNL---FIN 120 GGG A F L S F TG D + ++F+R ++VGL S + G + +G++L FI Sbjct: 76 GGGLQAQFALSSFFRPDTGAQGRFDSD--TMFSRDAHVGL-SGSFGRVSVGRDLAPNFIP 132 Query: 121 NDV-------WFLDPTGQQWIGTANLVRGRNWP-------GASNVIEYTTPTYGGFGATL 166 + P + RG+ W G SN I Y P GGF +L Sbjct: 133 TLTFSPFGGSFAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSL 192 Query: 167 QTSLGEAAGSFSKG--GTSTKYGRKDGLSLVYQNNGLELRGIYDVVRDPNGR-------- 216 GE AG K G +T Y + LS +++ D V + R Sbjct: 193 FFQFGEQAGKPGKNNYGANTMY-EQGPLSFGAYFQSVKVNNPLDSVTSGDSRVFTFTPYN 251 Query: 217 ------YTDVYDTSKELILGGTYKIDKLKLF--LGYENLRAPDVNPASGAPDRVNHYWLG 268 YT + +GG Y + +KLF L Y R + S + N LG Sbjct: 252 QATGATYTLAASRNDTWFVGGAYDLQFMKLFGTLNYSTNRLIGIANDSQYDLKSNTVQLG 311 Query: 269 ANYDV----------TSQLQLVGSVFHVNANNGNGSA---NLFMAGVNYFLSKRTLLY 313 + V + ++ G V G S+ N G +YFLSKRT +Y Sbjct: 312 TSVPVGKGSVLFSWARTNVKADGDFSAVLGGAGGKSSIIRNTASLGYDYFLSKRTDVY 369 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 706,808 Number of extensions: 33097 Number of successful extensions: 69 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 4 Length of query: 354 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 271 Effective length of database: 726,862 Effective search space: 196979602 Effective search space used: 196979602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)