BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0834.p (261 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 100 8e-23 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 99 2e-22 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 95 3e-21 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 84 6e-18 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 77 7e-16 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 100 bits (248), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 112/246 (45%), Gaps = 8/246 (3%) Query: 16 LKGKRVFITGGGTGIGAAIVEAFAQQGAHVAFVDIATEASEALCNEVAAAGHPKPLFRHC 75 L G+ +TG GIG AI +A A+QG V + + A+ +A +G L Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVL---- 61 Query: 76 DLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAV 135 D+ D A I E+Q + G +LVNNA Q + E W+ IA N Sbjct: 62 DVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLS 121 Query: 136 QSVVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPHKIRVNT 195 ++V+ GM + G IIN +S+ G Y AKA G++R LAR++G I VN Sbjct: 122 RAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 196 VTPGWVMTERQIKLWLDEEGKKSIARNQCLQGDL-LPWHLARMVLFLAADDSAMCTAQEF 254 V PG++ T+ L E + S Q G L +P +A V FLA+ ++ T Sbjct: 182 VAPGFIDTDMTKTL---SEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTL 238 Query: 255 IVDAGW 260 V+ G Sbjct: 239 HVNGGM 244 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 99.0 bits (245), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 11/243 (4%) Query: 22 FITGGGTGIGAAIVEAFAQQGAHV--AFVDIATEASEALCNEVAAAGHPKPLFRH--CDL 77 +TGG G+G AI A G V + T A E L + A+G+ FR CD+ Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLAT-MKASGYD---FRAYPCDV 61 Query: 78 RDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAVQS 137 D + Q +A ++ ++G+ DVLVNNA + +++ W+ + N F + Sbjct: 62 SDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKP 121 Query: 138 VVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPHKIRVNTVT 197 V +GM RG G IIN SS++ + G Y+ AKA G T+ LA ++ + VNT++ Sbjct: 122 VCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 198 PGWVMTERQIKLWLDEEGKKSIARNQCLQGDL-LPWHLARMVLFLAADDSAMCTAQEFIV 256 PG++ T+ + D K + Q G L P +A +V +LA+D++A T + Sbjct: 182 PGYIGTKMVTAIPQDVLDTKIVP--QIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAI 239 Query: 257 DAG 259 + G Sbjct: 240 NGG 242 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 95.1 bits (235), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 35/269 (13%) Query: 15 SLKGKRVFITGGGTGIGAAIVEAFAQQGAHVAFVDIATEASEALCNEVAA--AG------ 66 +L+GK ITG +GIG I A AQQGAH+ NE+AA AG Sbjct: 5 TLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGD------ANEIAALQAGLTQDYG 58 Query: 67 -----HPKPLFRHCDLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWN 121 HP + R ++ + F A + G D+LVNNA +E+ +E W+ Sbjct: 59 VQSTYHPADMSRPQEIAAMMQFAAA------KFGSVDILVNNAGIQHVADIEDFPVEKWD 112 Query: 122 DRIAINQRPSFFAVQSVVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRG 181 IAIN +F + + MK + G IIN +S Y AK +GL++ Sbjct: 113 AIIAINLSSAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKV 172 Query: 182 LARDLGPHKIRVNTVTPGWVMT---ERQIKLWL------DEEGKKSIARNQCLQGDLL-P 231 A + + N + PGWV+T ++Q+ + +++ KK + + G+ + P Sbjct: 173 TALENAQTGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTP 232 Query: 232 WHLARMVLFLAADDSAMCTAQEFIVDAGW 260 L + +FL ++ + + +D GW Sbjct: 233 EQLGALAVFLCSEAANQVRGAAWSMDGGW 261 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 84.3 bits (207), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 110/246 (44%), Gaps = 17/246 (6%) Query: 19 KRVFITGGGTGIGAAIVEAFAQQGAHVA--FVDIATEASEALCNEVAAAGHPKPLFRHC- 75 K ++GG G+GAAI G VA + A A+E N P+F C Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRKNT------SIPVF--CW 54 Query: 76 DLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAV 135 D+ D Q I +++ +G D+LVNNA + L +T W + I N F Sbjct: 55 DVSDYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMS 114 Query: 136 QSVVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPHKIRVNT 195 ++V+EGM+ R G IIN SS++ + G Y AKA G T+ LA + I VN Sbjct: 115 RNVIEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNA 174 Query: 196 VTPGWVMTE--RQIKLWLDEEGKKSIARNQCLQGDLLPWHLARMVLFLAADDSAMCTAQE 253 + PG+ T+ I + E+ I G +AR+V+FLA + S T Sbjct: 175 IAPGYCDTDMVSAIPQEVLEKIVTGIPVGHLGTGS----DIARLVVFLADNASGFITGAT 230 Query: 254 FIVDAG 259 F V+ G Sbjct: 231 FDVNGG 236 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 77.4 bits (189), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 76 DLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAV 135 D+ D + ++ IA + + G D+LVNNA R +L +VT E + + NQR +FF Sbjct: 36 DVTDYASIKSAIAHAETEAGAIDILVNNAGVAARGRLLDVTPEEYAYVMDTNQRGAFFVA 95 Query: 136 QSVVEGMKRRGGGS------IINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPH 189 Q V + M R G IIN +S++ + Y+ +KA+ + +T+ +A + G Sbjct: 96 QEVAKRMIARAKGDAKKQHRIINIASVAGLRVMPELGAYSMSKAALVHMTKTMAVEWGKF 155 Query: 190 KIRVNTVTPGWVMTERQIKLWLDEEGK 216 I VN + PG++ TE + + E+GK Sbjct: 156 GINVNAICPGYIGTELNQEYFKSEQGK 182 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 432,183 Number of extensions: 15174 Number of successful extensions: 66 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 12 Length of query: 261 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 181 Effective length of database: 736,747 Effective search space: 133351207 Effective search space used: 133351207 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)