BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0831.p (518 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 134 1e-32 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 107 2e-24 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 103 1e-23 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 103 3e-23 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 102 5e-23 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 137/525 (26%), Positives = 249/525 (47%), Gaps = 71/525 (13%) Query: 3 NILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGD 62 N+LE++ ++ SF K +N+V+ ++ GE A+VGE+G+GK+ + + +Y+G Sbjct: 2 NLLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGR 61 Query: 63 IVYKGE---VRAFKDIRDSEHLGIIIIHQE--LALVPLLSVMENLFLGNEQARGGV---- 113 I+++G+ R+ +R + +I QE AL PL ++ GN+ A G + Sbjct: 62 ILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTI------GNQIAEGLMLHEG 115 Query: 114 IDWEQSYVRAKELLAKVGLKESPQ----ALVGDLGVGKQQLIEIAKALSKEVKLLILDEP 169 + + +RA ELL K G+ E PQ + L G++Q IA AL+ + KLLI DEP Sbjct: 116 LSARIAALRAIELLDKTGIPE-PQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEP 174 Query: 170 TASLNESDSDALLELLLELKR-QGIASILISHKLNEISKVADSITVLRDGTTVDT----- 223 T +L+ + ++ELL +L+R + +A ++I+H LN + AD + V+ G V+ Sbjct: 175 TTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRE 234 Query: 224 -FDCRAEPISEDRII---QHMVGREMADRYPQRDPQIGEVIFEVRD-WRVHHPLHSDRLA 278 F E + + Q +V P + F+++ W P +A Sbjct: 235 LFTAPRETYTRKLLASQPQQLVNTLNESAVPLLSAEHVRCTFDIKQGWFKTTPF----VA 290 Query: 279 IKDVNMTVRAGEIVGIAGLMGAGRTELAKSIFGRAYGKKITGQAFLHGKEVDL------- 331 + DV++ VR GE +GI G G+G+T L ++ R +++G GK ++ Sbjct: 291 VDDVSVQVRPGETLGIVGESGSGKTTLGLALL-RLSSARVSGTIAFDGKPLNAMQSDALR 349 Query: 332 ---STIEKAIAKGIAYVTEDRK-----GDGLVLEEDIKKNISLANLGGVSER-TVIDEAR 382 + ++ A ++ R G+GL L + LG R V D Sbjct: 350 PLRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQP--------QLGAAGIRKAVADALL 401 Query: 383 EYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSKWLFSQPEVLILDEPTRGIDVGA 442 E + D + + SGG +Q++ +++ L +P++++LDEPT +DV Sbjct: 402 EVGLPPDI----------MARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSV 451 Query: 443 KFEIYNIISKLAAEGK-CIIMISSEMPELLGMCDRIYVMNEGQFV 486 + ++ ++ +L + + I IS ++ + M R+ VM +G+ V Sbjct: 452 QQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVV 496 Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 27/231 (11%) Query: 8 RGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDIVYKG 67 +G K+ P V A+++V++ VR GE IVGE+G+GK+TL L + SG I + G Sbjct: 280 QGWFKTTPFV-AVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLS-SARVSGTIAFDG 337 Query: 68 ------EVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLF---LGNEQARGGVIDWEQ 118 + A + +R I+ A + +E + L Q + G + Sbjct: 338 KPLNAMQSDALRPLRARMQ---IVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRK 394 Query: 119 SYVRAKELLAKVGLKES-----PQALVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASL 173 + A L +VGL P G G++Q I IA+ L + L++LDEPT+SL Sbjct: 395 AVADA---LLEVGLPPDIMARYPHEFSG----GQRQRIAIARVLVLKPDLVLLDEPTSSL 447 Query: 174 NESDSDALLELLLEL-KRQGIASILISHKLNEISKVADSITVLRDGTTVDT 223 + S +L+LLLEL K+ +A I ISH L I +A + V++DG V++ Sbjct: 448 DVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVES 498 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 22/234 (9%) Query: 4 ILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 IL + + K F G++AL +VN+ + +G+I+ ++G NGAGK+T V++G+Y S S ++ Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 64 VYKGEVRAFKDIRDSEHL----GIIIIHQELALVPLLSVMENLFLG----NEQARGGVI- 114 K A+ + HL GI Q + L ++ +EN+ +G Q G + Sbjct: 70 AGK----AYSP--SAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVF 123 Query: 115 -----DWEQSYVRAK--ELLAKVGLKESPQALVGDLGVGKQQLIEIAKALSKEVKLLILD 167 E++ +RA+ ELL VG+ + L G Q+ +EIA+AL+ + +LL LD Sbjct: 124 HHKAARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALD 183 Query: 168 EPTASLNESDSDALLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTV 221 EP A +N ++ L ELL+++K +G +LI H + + + D ITVL G + Sbjct: 184 EPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPI 237 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 22/220 (10%) Query: 278 AIKDVNMTVRAGEIVGIAGLMGAGRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKA 337 A+ DVN+ + G+I G+ G GAG+T I G +G L GK S Sbjct: 25 ALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQAD--SGSFELAGKAYSPSAPHLV 82 Query: 338 IAKGIAYVTEDRKGDGLVLEEDIKKNISLANLGGVSERT---VIDEAREYKIAADFKQQM 394 GIA ++ + L E +N+ + G RT + +K A + + Sbjct: 83 AKAGIARTFQNIR---LFGEMTALENVMV----GRHVRTHQGLFGAVFHHKAARQEEAAI 135 Query: 395 RIRCSSVLQKV----------VNLSGGNQQKVVLSKWLFSQPEVLILDEPTRGIDVGAKF 444 R R +L V +LS G+Q+++ +++ L + P++L LDEP G++ K Sbjct: 136 RARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKL 195 Query: 445 EIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVMNEGQ 484 + ++ K+ AEGK I++I ++ ++G+CDRI V++ G+ Sbjct: 196 GLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGK 235 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 127/253 (50%), Gaps = 15/253 (5%) Query: 2 SNILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSG 61 + L+ + + +F G+ A + V+ ++ G +H+++G NGAGKST + +SG Y SG Sbjct: 345 TTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYR--PTSG 402 Query: 62 DIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLG-NEQARGGVI------ 114 I + G++ K +G+ Q L ++ +EN+ +G + + R G+ Sbjct: 403 SIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRL 462 Query: 115 -----DWEQSYVRAKELLAKVGLKESPQALVGDLGVGKQQLIEIAKALSKEVKLLILDEP 169 D + A+ LL VGL + + +L G Q+ +EIA+AL+ KLL+LDEP Sbjct: 463 PSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEP 522 Query: 170 TASLNESDSDALLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAE 229 A L + + L++L+ L I +L+ H ++ I V+D +TVL G + + AE Sbjct: 523 AAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIAS-GTVAE 581 Query: 230 PISEDRIIQHMVG 242 S +I+ G Sbjct: 582 VRSNPAVIEAYFG 594 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 4 ILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPH--GSYSG 61 ++EM+ + K + + LN+ +V +G++ + G +G+GKSTL+K ++G+ P GS + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 62 DIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSYV 121 D + G+ + S I ++ Q L P LS+ ENL LG + G E++ Sbjct: 61 DGISVGDPKTNLPALRSR---IGMVFQNFELFPHLSIRENLTLGQIRVLGR--SEEEAAE 115 Query: 122 RAKELLAKVGLKESPQALVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDAL 181 R + L +VGL G L G+QQ + IA+AL+ + ++ DEPT++L+ + + Sbjct: 116 RGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEV 175 Query: 182 LELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDC 226 L++++ L + G+ ++++H++ KVA+ + + GT V+ DC Sbjct: 176 LDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVE--DC 218 Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 13/217 (5%) Query: 279 IKDVNMTVRAGEIVGIAGLMGAGRTELAKSIFGRAYGKKITGQAFLHGKEV-DLSTIEKA 337 + D +V G++V + G G+G++ L K++ G +K G + G V D T A Sbjct: 17 LNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQK--GSITVDGISVGDPKTNLPA 74 Query: 338 IAKGIAYVTEDRKGDGLVLEEDIKKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIR 397 + I V ++ + L I++N++L + V+ + E K R+ Sbjct: 75 LRSRIGMVFQNFE---LFPHLSIRENLTLGQI------RVLGRSEEEAAERGLKYLDRVG 125 Query: 398 CSSVLQKVV-NLSGGNQQKVVLSKWLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAE 456 + K LSGG QQ+V +++ L P ++ DEPT +D E+ +++ LA + Sbjct: 126 LIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQD 185 Query: 457 GKCIIMISSEMPELLGMCDRIYVMNEGQFVGHLSKAE 493 G +++++ EM + +R+ M++G V +K E Sbjct: 186 GMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDE 222 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 134/486 (27%), Positives = 210/486 (43%), Gaps = 47/486 (9%) Query: 19 ALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDIVYKGEVRAFKDIRDS 78 AL +++L + + ++G +G GKS+L+ + +G S D++ G++R K RD+ Sbjct: 23 ALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGSADVL-GGDMRR-KRHRDA 80 Query: 79 EHLGIIIIHQELA--LVPLLSVMENLFLGNEQARGGVIDWEQSYVRAKELLAKVGLKESP 136 I + Q L L P LSV ENL AR D + R L GL Sbjct: 81 VCPRIAYMPQGLGKNLYPTLSVEENL---QFFARLFGHDAAERRRRIDSLTRSTGLFPFL 137 Query: 137 QALVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLELLLELKRQ--GIA 194 VG L G +Q + + AL + LLILDEPT ++ L+ +++Q I+ Sbjct: 138 TRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWSLIAGIRQQRPQIS 197 Query: 195 SILISHKLNEISKV-----ADSITVLRDGTTVDTFDCRAEPISEDRIIQHMV-----GRE 244 I+ + ++E D VL G + E I + G + Sbjct: 198 VIVATAYMDEAQGFDWLVAMDGGRVLATGAPQELLAQTGSADLEAAFIALLPEEKKRGHQ 257 Query: 245 MADRYPQRDPQIGEVIFEVRDWRVHHPLHSDRLAIKDVNMTVRAGEIVGIAGLMGAGRTE 304 + P EV E RD + D A+ VN +R GEI G G G G+T Sbjct: 258 AVEIQPLALGADAEVAIEARDLTMRF---GDFTAVDHVNFRIRRGEIFGFIGSNGCGKTT 314 Query: 305 LAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIAKGIAYVTEDRKGDGLVLEEDIKKNI 364 K + G + G+A+L G EVD I A + + Y+++ L E + +N+ Sbjct: 315 TMKVLTGLLAASE--GRAWLFGHEVDPHDI--ATRRRVGYMSQSFS---LYSELSVMQNL 367 Query: 365 SL-ANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVN-----LSGGNQQKVVL 418 L A L V E V A QQM R L++ ++ L G +Q++ L Sbjct: 368 VLHARLFNVPEAEVAARA----------QQMLTRFG--LEEEIDALPNKLPLGMRQRLSL 415 Query: 419 SKWLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIY 478 + + PE+LILDEPT G+D A+ + ++ +L+ + I IS+ CDRI Sbjct: 416 AVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSRRDRVTIFISTHFMNEAERCDRIS 475 Query: 479 VMNEGQ 484 +M+ G+ Sbjct: 476 LMHAGK 481 Score = 102 bits (253), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 9/215 (4%) Query: 5 LEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDIV 64 +E R + F A+++VN +R GEI +G NG GK+T MKVL+G+ S + Sbjct: 274 IEARDLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLL-AASEGRAWL 332 Query: 65 YKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSYVRAK 124 + EV DI +G + Q +L LSVM+NL L AR + + RA+ Sbjct: 333 FGHEVDP-HDIATRRRVGYM--SQSFSLYSELSVMQNLVL---HARLFNVPEAEVAARAQ 386 Query: 125 ELLAKVGLKESPQALVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLEL 184 ++L + GL+E AL L +G +Q + +A A+ +LLILDEPT+ ++ D L Sbjct: 387 QMLTRFGLEEEIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRL 446 Query: 185 LLELKRQGIASILIS-HKLNEISKVADSITVLRDG 218 L+EL R+ +I IS H +NE + D I+++ G Sbjct: 447 LIELSRRDRVTIFISTHFMNEAER-CDRISLMHAG 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 913,597 Number of extensions: 37537 Number of successful extensions: 391 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 69 Length of query: 518 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 432 Effective length of database: 716,977 Effective search space: 309734064 Effective search space used: 309734064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)