BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0827.p (516 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 120 2e-28 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 114 9e-27 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 107 1e-24 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 103 2e-23 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 103 3e-23 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 12/225 (5%) Query: 12 MLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIEL 71 +L ++ + K F G++ALTDV +++ G+++ L+G NGAGK+T V+TG+++ D G EL Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 72 DGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPRR----FG--------R 119 G+A +P++ GI+ +Q + L ++ EN+ VGR+ R FG R Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAAR 129 Query: 120 IDWKSVHAQSKQLLQQLQIDIDVGAQLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSL 179 + ++ A++ +LL + I G Q+ + I+RAL+ ++L LDEP + + Sbjct: 130 QEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 189 Query: 180 DEAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG 224 + E L ++L +++ +G IL + H + + DRITVL G Sbjct: 190 NATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYG 234 Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 14/216 (6%) Query: 283 FGRRGVLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLNVP 342 FG L ++++ +G+++GL G G+G+T ++ G +AD G + G++ + P Sbjct: 20 FGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELAGKAYSPSAP 79 Query: 343 RDAIAAGIGFCSEDRKKEGAILELSVRENIILALQAR--QGLF-RVLPRK--RQNQIA-- 395 AGI ++ + G E++ EN+++ R QGLF V K RQ + A Sbjct: 80 HLVAKAGIARTFQNIRLFG---EMTALENVMVGRHVRTHQGLFGAVFHHKAARQEEAAIR 136 Query: 396 ---ADYVKWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQ 452 + + ++GI T L S G+Q++ +AR LATDP +L LDEP G++ K Sbjct: 137 ARAMELLDFVGIAQFAGRTARHL-SYGDQRRLEIARALATDPQLLALDEPAAGMNATEKL 195 Query: 453 EIMDFVIAMCRKGMSILFISSEIPEVLRCSDRMLVL 488 + + ++ + +G +IL I ++ V+ DR+ VL Sbjct: 196 GLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVL 231 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 114 bits (286), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 16/226 (7%) Query: 13 LELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIELD 72 L+ + AF G+ A V L G VH+++G NGAGKST I ++G + P G IE Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 73 GRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVG--------------RYPRRFG 118 G+ + + +G++ +Q L +++ EN+ VG R P F Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 119 RIDWKSVHAQSKQLLQQLQIDIDVGAQLSSYPLAIQQMVAISRALSVSAKVLILDEPTSS 178 D + A+++ LL+ + +D + + P Q+ + I+RAL++S K+L+LDEP + Sbjct: 468 --DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAG 525 Query: 179 LDEAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG 224 L E++ L K++R L + +L V H +D +SD +TVL G Sbjct: 526 LTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYG 571 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 13/218 (5%) Query: 13 LELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIELD 72 +E+ I+K F AL DV L GE+ L+G +G GK+TL++++ G+ +PD G++ LD Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 73 GRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVG-RYPRRFGRIDWKSVHAQSKQ 131 G + E Q + V+Q L +++V ENI G R R + + + Sbjct: 63 GEDASARHVRERQ---VGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTK 119 Query: 132 LLQQLQIDIDVGAQLSSYPLAI----QQMVAISRALSVSAKVLILDEPTSSLDEAEVQQL 187 LL+ +Q+D YP + +Q +A++RAL+V +VL+LDEP +LD ++L Sbjct: 120 LLELVQLDW----LADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 188 FKVLRRLREQ-GMAILFVTHFLDQTYEISDRITVLRNG 224 + LRRL ++ + +FVTH ++ E++D+I ++ G Sbjct: 176 RRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKG 213 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 17/211 (8%) Query: 283 FGRRGVLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLNVP 342 FG L LE GE+ L G G G+T + R++ G ++ D GQ+ ++G Sbjct: 12 FGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDAS---A 68 Query: 343 RDAIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFR----VLPRKRQNQIAADY 398 R +GF + ++V ENI L+ R R V+ K + Sbjct: 69 RHVRERQVGFVFQ---HYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQ 125 Query: 399 VKWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFV 458 + WL AD P LSGG +Q+ LAR LA +P +L+LDEP +D + ++E+ ++ Sbjct: 126 LDWL----ADRYPP--QLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 459 IAMCRK-GMSILFISSEIPEVLRCSDRMLVL 488 + + ++ +F++ + E L +D+++++ Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLM 210 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 11/218 (5%) Query: 12 MLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIEL 71 M+E+ + K + + L D + G+V + G +G+GKSTLIK + G+ +G I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 72 DGRAIA-PASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKSVHAQSK 130 DG ++ P + L A I V+Q L P+LS+ EN+ +G+ R GR + ++ K Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQI-RVLGRSEEEAAERGLK 119 Query: 131 QLLQQLQIDIDVGAQLSSYPLAI----QQMVAISRALSVSAKVLILDEPTSSLDEAEVQQ 186 L + + + AQ +P + QQ VAI+RAL++ ++ DEPTS+LD + + Sbjct: 120 YLDR-----VGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINE 174 Query: 187 LFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG 224 + V+ L + GM ++ VTH + ++++R+ + G Sbjct: 175 VLDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQG 212 Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 17/211 (8%) Query: 283 FGRRGVLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSV---KL 339 +G VL + +G+V +CG GSG++ + + + G + G + ++G SV K Sbjct: 11 YGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVDGISVGDPKT 70 Query: 340 NVPRDAIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQN--QIAAD 397 N+P A+ + IG ++ + LS+REN+ L G RVL R + + Sbjct: 71 NLP--ALRSRIGMVFQNFE---LFPHLSIRENLTL------GQIRVLGRSEEEAAERGLK 119 Query: 398 YVKWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDF 457 Y+ +G+ + P G LSGG QQ+ +AR LA DP ++ DEPT +D E++D Sbjct: 120 YLDRVGLIAQKDKFP-GQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDV 178 Query: 458 VIAMCRKGMSILFISSEIPEVLRCSDRMLVL 488 ++ + + GM+++ ++ E+ + ++R++ + Sbjct: 179 MVGLAQDGMTMMVVTHEMGFARKVANRVIFM 209 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 19/235 (8%) Query: 13 LELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIELD 72 L + G+ + V L DV + + PG++ ++G NGAGKSTLI+ + G+ P QG+I + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 73 GRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRY--------PRRFGRIDWKS 124 GR +A T A GIS + + + P +SVAEN+ +G + R R+ Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARV--YE 121 Query: 125 VHAQSKQLLQQLQIDIDVGAQLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEV 184 + + K+ QL + G Q MV+I R L ++L++DEP+ L V Sbjct: 122 IFPRLKERAAQLAGTMSGGE---------QAMVSIGRGLMAEPQLLVIDEPSLGLSPLYV 172 Query: 185 QQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLD 239 ++ F V+RR+ G+ +L V QT IS VL G E EL+ D Sbjct: 173 KENFNVIRRINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASND 227 Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 9/215 (4%) Query: 282 GFGRRGVLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLNV 341 G+ + VL +E+ G++ + G G+G++ + R + G G++ GR++ Sbjct: 12 GYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWNGRNLAGEK 71 Query: 342 PRDAIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKW 401 IA+GI E RK +SV EN LAL A + R+R ++ + + Sbjct: 72 THAIIASGISCIPEGRK---VFPRMSVAEN--LALGAFLVTNSAVVRERLARVYEIFPR- 125 Query: 402 LGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAM 461 L + A L G +SGG Q + R L +P +L++DEP+ G+ +E + + + Sbjct: 126 LKERAAQLA---GTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRI 182 Query: 462 CRKGMSILFISSEIPEVLRCSDRMLVLRDRRACGQ 496 G+++L + + L S VL R + Sbjct: 183 NALGITVLLVEQNARQTLAISHYGYVLSQGRVMAE 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 897,592 Number of extensions: 36189 Number of successful extensions: 366 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 78 Length of query: 516 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 430 Effective length of database: 716,977 Effective search space: 308300110 Effective search space used: 308300110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)