BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0823.p
         (212 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094318|ref|YP_001099393.1| 4-hydroxy-2-oxoglutarate aldola...    59   2e-10

>gi|134094318|ref|YP_001099393.1| 4-hydroxy-2-oxoglutarate aldolase
           / 2-dehydro-3-deoxyphosphogluconate aldolase
           [Herminiimonas arsenicoxydans]
          Length = 192

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 17  MIAILRGVRNDEAHAI--GAALYESGFRIIEVPLNSPEPLASISILRKSLPADCIVGAGT 74
           MIAI     +D +HA+    AL   G R++EV L +   LA+I  + + +P + I+G GT
Sbjct: 1   MIAI-----DDLSHAVPLARALVAGGIRVLEVTLRTQYGLAAIREIAEQVP-EAILGVGT 54

Query: 75  VLKPALVQEVKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALDNGADVLK 134
           + +       +DAG    V P     +I  AR +GL   PGV T +E   A + G   +K
Sbjct: 55  LTRHEDFAAARDAGAIFGVSPGLTKELIEGARSSGLPLLPGVMTPSEVMRAREAGFRQVK 114

Query: 135 MFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFRAA 176
           +FPA   G   +    A    D+   P GGI+ E  A F A 
Sbjct: 115 LFPAVPAGGVGMLNAIAGPLPDMLFCPTGGISQETAAQFLAC 156


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 402,022
Number of extensions: 16042
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 134
Effective length of database: 743,337
Effective search space: 99607158
Effective search space used: 99607158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)