BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0815.p (791 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog... 298 5e-82 gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde deh... 191 1e-49 gi|134095327|ref|YP_001100402.1| multifunctional: transcriptiona... 153 4e-38 >gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrogenase I, NADP-dependent [Herminiimonas arsenicoxydans] Length = 492 Score = 298 bits (764), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 169/466 (36%), Positives = 260/466 (55%), Gaps = 16/466 (3%) Query: 36 FIGGRFTRPGAQLEDVDPASGKLLAHLTQGSPADVEAAVNAAQAALPDWQALGGHGRARH 95 +I G + + +PA G ++ + E A+ AAQ+A P W A G RA Sbjct: 22 YIDGTWAGAATNFDISNPADGSIIGSAPNMGAEETETAIRAAQSAFPAWAAKTGKERAII 81 Query: 96 LYALARSVQRHARLLAVLETLDNGKPLRESRDIDVPLVARHFYHYAGWAQL--------- 146 + + + LA+L T + GKPL ESR +V A ++ A+ Sbjct: 82 MRQWFDLIIANVDDLAILMTAEQGKPLIESRG-EVIYGASFIEWFSEEAKRVSGDVMAST 140 Query: 147 --QEREFPDHVPLGVVGQIVPWNFPLLMLAWKIAPALALGNTVVLKPAETTSLSALLFAE 204 +R P+G+ I PWNFP+ M+ K+APA+A G T+V+KPAE T LSAL AE Sbjct: 141 WNDKRTLTIKQPIGICAAITPWNFPIAMITRKVAPAVAAGCTIVIKPAEQTPLSALAIAE 200 Query: 205 LAQQAGLPAGVLNIVTGDG----ATGAAVVAHPGIQKIAFTGSTEVGRLIRQQTAGSGKS 260 LA +AGLPAGV+N++T D G + A P ++ ++FTGST VGR++ +Q A + K Sbjct: 201 LAHRAGLPAGVINVITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAPTVKK 260 Query: 261 LTLELGGKSPFIVFEDADIDAAIEGVVDAIWFNQGQVCCAGSRLLVQEGIHDLFIARLKT 320 + LELGG +PFIVF+DAD+DAA+ G + + + N GQ C +R V E I+D+F+ +L Sbjct: 261 IALELGGHAPFIVFDDADLDAAVTGALQSKYRNAGQTCVCTNRFYVHESIYDVFVQKLAA 320 Query: 321 RMEKLKVGAPLDKCSDMGALISAEQLQRVKRLVEQGVREGAQCHQVALQTDPAGCFYPPT 380 ++KVG ++ G LI + +++V++ V V++GA + G FY PT Sbjct: 321 GAARIKVGNGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVMTGGKKHALGGHFYEPT 380 Query: 381 LLTSVHPACTVATEEIFGPVLVAMSFRTPDEAVQLANNSRYGLAASIWSETIGLALGVAP 440 +L+++ ++ EE FGPV + F+T DEA+ ANN+ +GLA+ ++ I VA Sbjct: 381 VLSNITDDMSIMHEETFGPVAAIVKFKTEDEAIAAANNTDFGLASYFYARDISRVWRVAE 440 Query: 441 QLKAGVVWINSTNQFDAAVGFGGYRESGYGREGGREGCYEYLKPRH 486 +L+ G+V IN+ + FGG ++SG GREG + G EYL+ ++ Sbjct: 441 KLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIDEYLEIKY 486 >gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein [Herminiimonas arsenicoxydans] Length = 506 Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 149/483 (30%), Positives = 241/483 (49%), Gaps = 31/483 (6%) Query: 35 HFIGGRFTRP--GAQLEDVDPASGKLLAHLTQGSPADVEAAVNAAQAALPDWQALGGHGR 92 H+I G T G Q +PA+G++ A++ S ADV+ AV AA+AA P W + R Sbjct: 11 HYINGNLTNTVGGGQQPVFNPATGEISANVVLASDADVQTAVAAAKAAAPAWAEMAPLKR 70 Query: 93 ARHLYALARSVQRHARLLAVLETLDNGKPLRESR-DIDVPLVARHFYHYAGWAQLQEREF 151 AR L+ ++RH LA T ++GK +++ ++ L F G QL + +F Sbjct: 71 ARILFKFKDLIERHHNDLAAAITREHGKVFSDAKGEVTRGLEVVEFA--CGVPQLLKTQF 128 Query: 152 PDHV-----------PLGVVGQIVPWNFPLLMLAWKIAPALALGNTVVLKPAETTSLSAL 200 D++ PLGV I P+NFP ++ W ALA GNT +LKP+E +L Sbjct: 129 SDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSL 188 Query: 201 LFAELAQQAGLPAGVLNIVTGDGATGAAVVAHPGIQKIAFTGSTEVGRLIRQQTAGSGKS 260 + AEL QAGLP GV N++ GD ++ HP I+ ++F GST + I Q A S Sbjct: 189 MVAELLHQAGLPDGVFNVLQGDKRAVDGLLQHPDIKAVSFVGSTPIAEYIYQAGAARKGS 248 Query: 261 LTLEL----GGKSPFIVFEDADIDAAIEGVVDAIWFNQGQVCCAGSRLLVQEGIHDLFIA 316 L + G K+ +V DA+++ A++ ++ A + + G+ C A S + + D +A Sbjct: 249 YPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGSVADKLVA 308 Query: 317 RLKTRMEKLKVGAPLDKCSDMGALISAEQLQRVKRLVEQGVREGAQC----HQVALQTDP 372 L R++ LKV ++ ++MG ++SA +++ +E G++ GA+ + + Sbjct: 309 ALIPRVKSLKVKNGMESDAEMGPVVSAAHKAKIEGYIEAGIKSGAKLLVDGRGLTVDGHS 368 Query: 373 AGCFYPPTLLTSVHPACTVATEEIFGPVLVAMSFRTPD--EAVQLANNSRYGLAASIWSE 430 G F L +V P T+ EEIFGPVL + R PD A+ L N +G ++++ Sbjct: 369 NGFFLGGCLFDNVTPEMTIYQEEIFGPVLCVV--RVPDFSAALDLINAHEFGNGVALFTS 426 Query: 431 TIGLALGVAPQLKAGVVWINSTNQFDAA-VGFGGYRESGYG--REGGREGCYEYLKPRHR 487 A + +++ G+V IN A FGG++ S +G G EG Y + + Sbjct: 427 DGNTAREFSRRVEIGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSI 486 Query: 488 LGR 490 + R Sbjct: 487 MQR 489 >gi|134095327|ref|YP_001100402.1| multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase [Herminiimonas arsenicoxydans] Length = 1224 Score = 153 bits (386), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 135/429 (31%), Positives = 197/429 (45%), Gaps = 41/429 (9%) Query: 69 DVEAAVNAAQAALPDWQALGGHGRARHLYALARSVQRHARLLAVLETLDNGKPL------ 122 DVE A+ A A WQ RA L A Q+HA L + GK L Sbjct: 602 DVERALALAIAGAEKWQKTAPSERAGILLNAAELFQQHAPEFIALSVREAGKTLPNAIGE 661 Query: 123 -RESRDIDVPLVARHFYHYAGWAQLQEREFPDHVPLGVVGQIVPWNFPLLMLAWKIAPAL 181 RE+ D R++ AQ+++ LG+V I PWNFPL + +++ AL Sbjct: 662 LRETIDF-----LRYYSAQITTAQMEQ-------ALGLVACISPWNFPLSIFTGQLSAAL 709 Query: 182 ALGNTVVLKPAETTSLSALLFAELAQQAGLPAGVLNIVTGDG-ATGAAVVAHPGIQKIAF 240 A GN V+ KPAE T L A +L QAG+P VL + G G TGA +VA + + F Sbjct: 710 AAGNAVLAKPAEQTPLIAFRAVQLMHQAGVPEDVLLFLPGRGQTTGAQLVADARVSGVVF 769 Query: 241 TGSTEVGRLIRQQTAGSGKS------LTLELGGKSPFIVFEDADIDAAIEGVVDAIWFNQ 294 TGST+V +I + A + L E GG++ IV A + + V+ + + + Sbjct: 770 TGSTQVATIIHRTLAQRSMAERRDIPLIAETGGQNAMIVDSSALCEQVVRDVIASAFDSA 829 Query: 295 GQVCCAGSRLLVQEGIHDLFIARLKTRMEKLKVGAPLDKCSDMGALISAEQLQRVKRLVE 354 GQ C A L +Q I + + L E+L+ G P +D+G +I AE Q ++ +E Sbjct: 830 GQRCSALRVLCLQTDIAEKTLNMLHGAFEELQTGRPDQLATDVGPVIDAEAQQHLRAYIE 889 Query: 355 QGVREGAQCHQVAL-QTDPAGCFYPPTLLTSVHPACTVATEEIFGPVLVAMSFRTPD--E 411 Q R Q+AL T G F P ++ + E+FGPVL + +R D + Sbjct: 890 QAGRRAKNMKQLALPSTGTQGTFVAPCIIEI--DRMSDLQREVFGPVLHVLRYRRDDLPQ 947 Query: 412 AVQLANNSRYGLAASIWS---ETIGLALGVAPQLKAGVVWINSTNQFDAAVG---FGGYR 465 V+ N + +GL + S ETI + + G +++N N A VG FGG Sbjct: 948 LVRDINATGFGLTLGVHSRIDETINY---IVDHARVGNIYVNR-NIIGAVVGVQPFGGEG 1003 Query: 466 ESGYGREGG 474 SG G + G Sbjct: 1004 LSGTGPKAG 1012 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,511,636 Number of extensions: 62826 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 4 Length of query: 791 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 702 Effective length of database: 707,092 Effective search space: 496378584 Effective search space used: 496378584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)