BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0810.p (519 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 102 4e-23 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 102 4e-23 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 102 6e-23 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 100 3e-22 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 99 4e-22 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 11/238 (4%) Query: 16 FLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYI 75 L+ Q + + + AL +DL++ GE ++G NG GK+TL+ ++ G P+ G ++ Sbjct: 7 LLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHF 66 Query: 76 QGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALS--EQLVRHQGRLARLFDRSA 133 G + + + + G+ +Q S+ P ++V E +A+S L LF Sbjct: 67 NGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGSRK 126 Query: 134 LNDTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQ 193 +ND R A L A +LDT+ LP R+L+ +A A A +++++DEPT ++ Sbjct: 127 VNDIVVRTADAFGL---APWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVST 183 Query: 194 KEVDALVKVINGLRAN---GV-AVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEF 247 + +++ + LRA G+ A++ V H +D + I + G+K+A P EF Sbjct: 184 ADKHGVMETL--LRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEF 239 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 139/522 (26%), Positives = 224/522 (42%), Gaps = 77/522 (14%) Query: 10 PALAQEFLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPS 69 P +A +RL + R+ AL I L I A + L+G +G GKS+L+ + AGA+ Sbjct: 2 PDMALPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQ 61 Query: 70 EGEIYIQGERVEQLTPLASLSLGIETVYQDL--SLLPNMSVAENVALSEQLVRHQGRLAR 127 +G + G + + ++ I + Q L +L P +SV EN+ AR Sbjct: 62 QGSADVLGGDMRRKRHRDAVCPRIAYMPQGLGKNLYPTLSVEENLQF----------FAR 111 Query: 128 LFDRSALNDTAGRALRAVNLPASA---EFLDTRVDELPIATRQLIAIARAIATSARMVIM 184 LF +D A R R +L S FL V +L +Q + + A+ ++I+ Sbjct: 112 LFG----HDAAERRRRIDSLTRSTGLFPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLIL 167 Query: 185 DEPTTSLTQKEVDALVKVINGLRAN--GVAVLFVSHKLDECFAIGGQAIVFRDGEKV-AQ 241 DEPTT + +I G+R ++V+ + +DE A G +V DG +V A Sbjct: 168 DEPTTGVDPLARAQFWSLIAGIRQQRPQISVIVATAYMDE--AQGFDWLVAMDGGRVLAT 225 Query: 242 GPIQEFTKARLGQLMTGKQ---------LSEERYR-------------VDAQLHKTRLEV 279 G QE L Q TG L EE+ R DA++ +E Sbjct: 226 GAPQEL----LAQ--TGSADLEAAFIALLPEEKKRGHQAVEIQPLALGADAEVA---IEA 276 Query: 280 RALT-RAGAF---EDVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRT 335 R LT R G F + V+F +R GEI G G G+ L G+ A G+ L G Sbjct: 277 RDLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLFGHE 336 Query: 336 LKLQTPGDAITHG-IGYVPEDRISEGLFLDKSIRDNII--TTILRKMRGKFGALDAAACE 392 + P D T +GY+ + S L+ + S+ N++ + + A Sbjct: 337 VD---PHDIATRRRVGYMSQ---SFSLYSELSVMQNLVLHARLFNVPEAEVAARAQQMLT 390 Query: 393 RFSVDTVRQLQIATPDVERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKD 452 RF ++ +++ L G +QR+ + + P +LIL PT GVD ++D Sbjct: 391 RFGLEE---------EIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARD 441 Query: 453 IIYRIIQDLARQGMGVILISDDLPELLQNCDNLLLMKRGRIV 494 +R++ +L+R+ I IS + CD + LM G+++ Sbjct: 442 NFWRLLIELSRRDRVTIFISTHFMNEAERCDRISLMHAGKVL 483 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 102 bits (253), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 4/233 (1%) Query: 14 QEFLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEI 73 Q L + V KRF G+ AL +++ I G+IY L+G NG GK+T +I G G Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 74 YIQGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSA 133 + G+ P GI +Q++ L M+ ENV + + HQG +F A Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKA 127 Query: 134 LNDTA----GRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTT 189 RA+ ++ A+F L ++ + IARA+AT +++ +DEP Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 190 SLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQG 242 + E L +++ ++A G +L + H + + + V G+ +A+G Sbjct: 188 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEG 240 Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 11/214 (5%) Query: 287 AFEDVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAIT 346 A DV+ + +G+I G+ G +G+ + G+ A +G L G+ P Sbjct: 25 ALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELAGKAYSPSAPHLVAK 84 Query: 347 HGIGYVPEDRISEGLFLDKSIRDNIIT-TILRKMRGKFGALDAAACERFSVDTVRQLQIA 405 GI ++ LF + + +N++ +R +G FGA+ R +R + Sbjct: 85 AGIARTFQNI---RLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQEEAAIRARAME 141 Query: 406 TPDV-------ERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRII 458 D R + LS G+Q+R+ I R LA +P++L L P G++ K + ++ Sbjct: 142 LLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELL 201 Query: 459 QDLARQGMGVILISDDLPELLQNCDNLLLMKRGR 492 + +G ++LI D+ ++ CD + ++ G+ Sbjct: 202 VKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGK 235 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 15/222 (6%) Query: 16 FLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYI 75 L ++ + +RF + I L+I AGE + LLG +GCGK+TL+++IAG P G+I + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 76 QGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSALN 135 G + + P + + TV+Q+ +L P+M+VA N+A ++ +S + Sbjct: 63 DGVDLTGVPPEQRV---VRTVFQNYALFPHMTVAGNIAFPLEMANTP--------KSEIK 111 Query: 136 DTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKE 195 AL V L F EL RQ ++IARA+ T +++++DEP ++L + Sbjct: 112 QKVDEALEDVRLTG---FAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQL 168 Query: 196 VDAL-VKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDG 236 + + +++IN + G+ ++V+H E A+ + V G Sbjct: 169 REQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKG 210 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 131/530 (24%), Positives = 234/530 (44%), Gaps = 61/530 (11%) Query: 16 FLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKS-TLIKIIAGAQPPS-EGEI 73 L +Q + F + + +I AGE + L+GE+G GK+ T + I+ Q + G I Sbjct: 3 LLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRI 62 Query: 74 YIQGERVEQLTPLASLSL---GIETVYQD--LSLLPNMSVAENVALSEQLVRHQGRLAR- 127 +G+ + Q + A ++ + ++Q+ +L P ++ +A E L+ H+G AR Sbjct: 63 LFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIA--EGLMLHEGLSARI 120 Query: 128 -------LFDRSALNDTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSAR 180 L D++ + + RAL + +L RQ IA A+A + Sbjct: 121 AALRAIELLDKTGIPEPQRRAL-------------SYPHQLSGGQRQRAMIAMALACKPK 167 Query: 181 MVIMDEPTTSLTQKEVDALVKVINGL-RANGVAVLFVSHKLDECFAIGGQAIVFRDG--- 236 ++I DEPTT+L +V+++N L R +AVL ++H L+ + V G Sbjct: 168 LLIADEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLV 227 Query: 237 -----EKVAQGPIQEFTKARLG----QLMTGKQ------LSEERYRVDAQLHKTRLEVRA 281 ++ P + +T+ L QL+ LS E R + + + Sbjct: 228 EVAATRELFTAPRETYTRKLLASQPQQLVNTLNESAVPLLSAEHVRCTFDIKQGWFKTTP 287 Query: 282 LTRAGAFEDVSFALREGEILGITGLLDSGRNELALALAGVAPAQ-TGQIVLDGRTLKLQT 340 A +DVS +R GE LGI G SG+ L LAL ++ A+ +G I DG+ L Sbjct: 288 FV---AVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQ 344 Query: 341 PGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACERFSVDTVR 400 DA+ + + + F S R I + + L AA + D + Sbjct: 345 -SDALRPLRARM--QIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALL 401 Query: 401 QLQIATPDVERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQD 460 ++ + + R SGG +QR+ I R L + P +++L PT +DV + + +++ + Sbjct: 402 EVGLPPDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLE 461 Query: 461 LARQ-GMGVILISDDLPELLQNCDNLLLMKRGRIVRRFEVEGLSESDLSH 509 L ++ + I IS DL + +++MK G++V G++++ LS Sbjct: 462 LQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVE----SGMTQAVLSQ 507 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 936,477 Number of extensions: 39602 Number of successful extensions: 337 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 270 Number of HSP's successfully gapped: 59 Length of query: 519 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 433 Effective length of database: 716,977 Effective search space: 310451041 Effective search space used: 310451041 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)