BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0808.p (520 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 109 3e-25 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 107 2e-24 gi|134094440|ref|YP_001099515.1| signaling protein [Herminiimona... 104 1e-23 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 99 5e-22 gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [... 98 1e-21 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 12/242 (4%) Query: 260 VLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAAQNRL 319 +L +LR I N E VL YQP + + + + G EAL RW + + P F+PLA + L Sbjct: 462 LLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSA-EGMVSPGSFIPLAEETGL 520 Query: 320 STALAKVVLARALREMRELLQANPALI-LTINTEVADIEDADFIQFALEITAPTPALRTQ 378 + VL A R+ R A A I +++N + D ++ ++ A T Sbjct: 521 IIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLEAQY 580 Query: 379 LHLEVTER---ADIRS--ATFTRNIEQLRQGGFAIWIDDFGTGSANLSHLSYAQFDGIKI 433 L LE+TE +D+ A TR LR G I +DDFGTG ++LS+L D +KI Sbjct: 581 LELEITESVMASDVEKSFALLTR----LRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKI 636 Query: 434 DRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGWLF 493 D+ F L+T ++V ++ L L+L V+ EGIETEEQ Q + A QG+L Sbjct: 637 DQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACN-EGQGYLM 695 Query: 494 SK 495 S+ Sbjct: 696 SR 697 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 6/259 (2%) Query: 256 RNQGVLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAA 315 R +L + + I +DE L YQP V +++ S+ G EAL RW + I P+ F+ LA Sbjct: 340 RETELLSRFKRAIKDDEFCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAE 399 Query: 316 QNRLSTALAKVVLARALREMRELL-QANPALILTINTEVADIEDADFIQFALEITAPTPA 374 N L L V+ A R++ Q P + + IN ++D ++ + A Sbjct: 400 NNDLIVPLGNWVVDAACRQLAVWRGQGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQI 459 Query: 375 LRTQLHLEVTERADIRS-ATFTRNIEQLRQGGFAIWIDDFGTGSANLSHLSYAQFDGIKI 433 L +EVTE I ++ +EQL++ G I +DD+GTG + L +L IKI Sbjct: 460 APEMLEIEVTESCFIEDFDAASQVLEQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKI 519 Query: 434 DRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGWLF 493 DR F + + +V + + LA L LQVV EG+E++EQL + A QG+ F Sbjct: 520 DRSFIRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQL-VHLKTAGCDQVQGFYF 578 Query: 494 SK---AMELRDVLQQQPYT 509 + A E+ +LQ+ +T Sbjct: 579 QRPVAATEIDTLLQRGRFT 597 >gi|134094440|ref|YP_001099515.1| signaling protein [Herminiimonas arsenicoxydans] Length = 711 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 123/249 (49%), Gaps = 9/249 (3%) Query: 254 LRRNQGVLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPL 313 +R ++ LR ++ ++YQP + + + G EAL RW+ D I P+ F+P+ Sbjct: 452 IRERVNMMHALRTAFEEKQLFVVYQPQIDLVTRAPVGAEALLRWQTEDNTMISPNRFIPI 511 Query: 314 AAQNRLSTALAKVVLARALREMRELLQAN-PALILTINTEVADIEDADFIQF---ALEIT 369 A + L L + VL +A +E+ + + ++++N F+ ALE T Sbjct: 512 AEYSGLIIELGEWVLRQACQELVRIQRLGFSNFMMSVNVSQVQFRHPHFLGMLRKALEDT 571 Query: 370 APTPALRTQLHLEVTERADIRSA-TFTRNIEQLRQGGFAIWIDDFGTGSANLSHLSYAQF 428 P + LE+TE + + ++Q+ G +I IDDFGTG ++LSHL Sbjct: 572 NAPPHC---IELEITESMAMEEPDALIKLLDQIAATGVSIAIDDFGTGFSSLSHLQKLNV 628 Query: 429 DGIKIDRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHA 488 D +KIDR F ++ S S+ +++L L+L V+ EG+E E Q +++ + Sbjct: 629 DRLKIDRTFVMEITDSSRGSSIAEMIIQLGRNLELDVIAEGVEDERQAKILTELGCPF-G 687 Query: 489 QGWLFSKAM 497 QG+LFS + Sbjct: 688 QGYLFSHPL 696 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 119/235 (50%), Gaps = 5/235 (2%) Query: 264 LRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAAQNRLSTAL 323 LR + +E+ + YQP V + D S++G+E L RW + I P+ F+P+A + + + Sbjct: 578 LRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISPNEFIPIAETSGMVVPI 637 Query: 324 AKVVLARALREMRELLQANPAL---ILTINTEVADIEDADFIQFALEITAPTPALRTQLH 380 + +A R++ + PA+ + +N + + F EI + + + Sbjct: 638 GMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQVREILDSSGVVPHTIE 697 Query: 381 LEVTERADIRSATFT-RNIEQLRQGGFAIWIDDFGTGSANLSHLSYAQFDGIKIDRLFTA 439 LE+TE + + + T N+ L+ G + +DDFGTG ++L++L D +KID+ F Sbjct: 698 LELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYLQKLPIDILKIDKTFVH 757 Query: 440 ALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGWLFS 494 L T R ++ ++ LA L+LQ V EG+ET + + + + QG++FS Sbjct: 758 GLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMGCDL-GQGFIFS 811 >gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [Herminiimonas arsenicoxydans] Length = 540 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 21/260 (8%) Query: 244 GALACLLYL-----RLRRNQGVLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWR 298 G C++Y R+ + + + + + N E +L YQPIV + + G+EAL RW Sbjct: 263 GKARCIIYNELAFNRIEHDVSMEAAMFEAVRNGEFLLHYQPIVDAQTRQIMGFEALMRWM 322 Query: 299 PLDQPEIG---PDVFVPLAAQNRLSTALAKVVLARALREMRELLQA-NPALILTINTEVA 354 +P+IG P+ F+P+A N L L L A +++ +A L +++N Sbjct: 323 ---RPDIGLVPPNQFIPMAEDNGLINLLGAWALKSACVQLKRFEEAAGRQLYVSVNVSPR 379 Query: 355 DIEDADFIQFALEITAPTPALRTQLHLEVTE---RADIRSATFTRNIEQLRQGGFAIWID 411 + F+ E + QL LE+TE +D A N ++ + G I ID Sbjct: 380 QFRNDQFLGMMDEALKLSGLEGHQLMLEITEGILMSDPEHAEVLLN--KIAERGVRIAID 437 Query: 412 DFGTGSANLSHLSYAQFDGIKIDRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIE 471 DFGTG ++L +L +KIDR F L ++ +L LA L+LQ V EG+E Sbjct: 438 DFGTGYSSLIYLKRFPIAALKIDRTFIKDLPASVKDAAICNVILNLAGSLNLQTVAEGVE 497 Query: 472 TEEQLQLI----CAIAPGIH 487 E+QL + C++ G H Sbjct: 498 NEQQLAFLSTQGCSLIQGFH 517 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 889,448 Number of extensions: 33393 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 13 Length of query: 520 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 434 Effective length of database: 716,977 Effective search space: 311168018 Effective search space used: 311168018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)