BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0801.p
         (112 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095274|ref|YP_001100349.1| Rieske family iron-sulfur clust...    64   1e-12

>gi|134095274|ref|YP_001100349.1| Rieske family iron-sulfur
           cluster-binding protein [Herminiimonas arsenicoxydans]
          Length = 123

 Score = 64.3 bits (155), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 3   LCHVTQLPEGGA--RGFDTEGAGQATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYLDA 60
           +C  + L EGG   R   T G   AT F++R G   RA+ + C H    L W    + ++
Sbjct: 8   ICDASALEEGGKGIRFPVTAGGDDATGFVVRYGGLARAYLNRCAHVPIELDWNEGDFFES 67

Query: 61  SGEHVVCAAHGALFDPLTGVCTLGPCLGDTLTAVPL 96
           SG +++C+ HGA++ P TG C  GPC G +L  + +
Sbjct: 68  SGLYLICSTHGAVYTPETGRCEGGPCRGRSLRRIEV 103


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.145    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 268,907
Number of extensions: 11273
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 42
Effective length of database: 769,697
Effective search space: 32327274
Effective search space used: 32327274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 122 (51.6 bits)