BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0797.p
         (307 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   127   6e-31

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  127 bits (319), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 163/318 (51%), Gaps = 17/318 (5%)

Query: 1   MRFNKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRM 60
           M F  LDLNLL   DA++TE N++RAA    ++Q A+SNAL RLR+   D L+I+    +
Sbjct: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGV 60

Query: 61  EPTPRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAH 120
           +PT RA  L   V   L  +E +++     V R +   FR++++D + ++ +P ++    
Sbjct: 61  KPTSRATELWPVVRRALSDLETAVTPDTFDVSRAT-TTFRMAMADATAALWLPFLVRAIE 119

Query: 121 AEGPDIRFALMP-QVQDPTRSLDRAEVDLLV-----LPQEFCTPDHPA------EEVFRE 168
            E P +   ++P   ++P   L R ++DL +     +  +  +  + A      E ++  
Sbjct: 120 KEAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTG 179

Query: 169 RHVCVVWRDSPLAEGELTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFN 228
            +VCV+ ++ PLA+ ELT + Y AA H+++   G     ++  + +++G ERR+ +T   
Sbjct: 180 EYVCVMRKNHPLAKEELTLDTYCAAHHLLVSFSGRAKGLMDDAL-SEVGRERRILLTVNQ 238

Query: 229 FASCMALVQGTDRIATVHGRLARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIE 288
           F +   +V  +D I  +   L      +  ++ K+ P  L E+H  M WH     +P  +
Sbjct: 239 FFTAGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHK 298

Query: 289 WLRRVFLESAREMDEVVG 306
           WLR   + S    D+ +G
Sbjct: 299 WLREQLITST---DDGIG 313


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 551,459
Number of extensions: 21744
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 226
Effective length of database: 733,452
Effective search space: 165760152
Effective search space used: 165760152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)