BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0794.p
         (316 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601 [...   108   3e-25

>gi|134093853|ref|YP_001098928.1| hypothetical protein HEAR0601
           [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  108 bits (270), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 6/270 (2%)

Query: 50  DVDIGDFVPAPAGTTVGLLYYQHVERTSLYAQGQKAATDPKLDSDIGIARLVHYTTIGGL 109
           +V  G F  AP GT    LY    +    Y  G++   D +L +   +    ++    G+
Sbjct: 5   EVYPGAFAVAPPGTQALSLYLYERKYEGFYIDGKRFG-DSELKAHATVLAYTNFGQTAGM 63

Query: 110 AFAPQVMVP--FGREDAGRDTAALGQTS-GVGDIILAAPFWPVNDAASRTYLGIAPYLYL 166
             +  + +P    R+ +G      G T+ G+GD+ L   FWPVND  S   L IA  L +
Sbjct: 64  PSSWNIALPDIHVRKTSGSLPYGFGDTTNGLGDVRLGYTFWPVNDTESGRSLAIASTLQI 123

Query: 167 PTGSYDHNRALNLGENRWKFDLQVGFVKGLTDKWYLELTGDGMVYGKNGDYGSSGATQRQ 226
           P+  YD++++LN G+NRW+  LQ+G+++ L+     +   +   Y  N ++   G T  Q
Sbjct: 124 PSADYDNSQSLNAGDNRWRATLQLGWIQKLSSTLTFDFVPEVSFYSPNHNFVGFGMT--Q 181

Query: 227 KPLFQGQSYLRYQFTPAANVFVSLSQTWGGETRINGVDSNDEARERKASIGGSWFILPKT 286
           KP +   +YLR++F P     V      GG   ING   ++E R+++  +G S  +    
Sbjct: 182 KPTYAATTYLRWRFMPIWEANVGFQANRGGAQNINGYVLDNERRQQRVFLGLSTALSKNI 241

Query: 287 QLLMALGRDLSVENGFKENARINLRLLHVF 316
              +    D S+    K  + + L   +VF
Sbjct: 242 FTGLRYSHDTSIGYELKTTSDLVLNFHYVF 271


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 600,387
Number of extensions: 26739
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 234
Effective length of database: 730,157
Effective search space: 170856738
Effective search space used: 170856738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)