BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0793.p
         (415 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase...    64   1e-11

>gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 596

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 151/367 (41%), Gaps = 38/367 (10%)

Query: 50  YQAMADAGFVKALLPESFGGTAMSTLDFALAAEELTAADVNLPSALLGTGLGLHAVVHHG 109
           ++A   AG+     P  FGG  +  +      E L AA+++     L T   + A++  G
Sbjct: 81  FKAYGAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAANLSFALCPLLTDGAIEALMTAG 140

Query: 110 TPEQKQRFLPDFIEDGSRLAALAFTEVTGGANYDSTDPSVGVQTFARLEGD-EWVINGAK 168
           +  QK+ FLP+FI  G     +  TE   G++         V++ A  +GD  + I+G K
Sbjct: 141 SEAQKETFLPNFIA-GKWTGTMNLTEPQAGSDLAM------VRSRAVPQGDGTYKISGTK 193

Query: 169 HYTTNGTGWDGKGAHLYSVICRTDPALPPQQSLAVIMVP----------GDAPGIEIVSL 218
            + T G   D     ++ V+ RT  A    + +++ +VP          G       VS+
Sbjct: 194 IFITYGE-HDMAENIVHLVLARTPDAPEGVKGISLFVVPKFLVNADGSLGARNDAYCVSI 252

Query: 219 LDTMGHRATISPRIHFNNVRVPASNIVGKPGDGITMLEGAFSWTAALIGAACVGVMRAAF 278
              +G RA+ +  + F +       +VG+   G+  +    +     +G   + V   A+
Sbjct: 253 EHKLGIRASPTAVLQFGDHGGAIGTLVGEENRGLETMFIMMNAARFAVGIQGIAVAERAY 312

Query: 279 DIALKFAHSDRRSG-------TVPVIEHQNVGFMLADIKMRIEAARYLTWKSCHQLDL-- 329
             A+ +A    +S         V +I   +V  ML  ++ +IEAAR L +      D+  
Sbjct: 313 QKAVSYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGAAAFDIAH 372

Query: 330 ----TEGRSRELAV------ITKTYCSELCVQVVYDAMRVVGVDAYTDLYPLAGLMQDAL 379
                E RS   A       + K + +E+ + V    +++ G   + +    A   +DA 
Sbjct: 373 HHADAEVRSSHQAFYEFLVPVIKGWATEMSIDVASTGLQIHGGMGFIEETGAAQYYRDAR 432

Query: 380 CFPLYDG 386
              +Y+G
Sbjct: 433 ILTIYEG 439


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 841,942
Number of extensions: 37291
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 331
Effective length of database: 723,567
Effective search space: 239500677
Effective search space used: 239500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)