BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0792.p
         (332 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092 [...    82   4e-17

>gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092
           [Herminiimonas arsenicoxydans]
          Length = 807

 Score = 81.6 bits (200), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 87  LEGSCVVRQDSQESLVLPGDFSIVDSTRPYFLDYQGDWQVLSFRIPREQVISRLASPYKA 146
            EG   +   ++ + V  GD  ++DS+R + L     ++    R+ +   ISRL    K 
Sbjct: 88  FEGVGQIDVGAETAAVSAGDIYLLDSSRQWKLALTSAFRASVIRLEKANFISRLMHTGKT 147

Query: 147 TARRVDGNTGMGLVASRFARSLEQVEPDMGSGISDGLSAALNSIIAIALGATLEAQERDR 206
              ++   +G+G +A  F  ++      +GSG  + +  AL++++  +L    E      
Sbjct: 148 DICKISSASGVGNIALEFVNAITCQLASLGSGDLEQMEDALSTMLVASLAHKEEEDVSHS 207

Query: 207 LPVREAFRMAVETYIRDHLEEPHLGPDMLALRFKVSRRTLYGLFEDAPLSVSGLIRELRL 266
             ++ +    +   I   L +P L    +A   ++S R L  LF  A  +    +++ RL
Sbjct: 208 TSMQLSHLRRICRTIEARLTDPELSAIDIARSEQLSARYLQKLFASAGTTFGEYVKKRRL 267

Query: 267 QRSARDL--LSPGHAGVLAIALRWGFSDASHFSRLFKRRFGVCPREFSDY--ALKGDYDA 322
            R   DL  LS  H  +  +  RWGF+DA++FSR F   FG+ P+ +     ++   Y+ 
Sbjct: 268 DRCRIDLSNLSLKHLTISELCFRWGFNDAANFSRAFHLEFGISPKGYRSQPKSVTKRYEL 327

Query: 323 RLSPLPGA 330
           R  P P A
Sbjct: 328 RGRPGPSA 335


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 591,913
Number of extensions: 22255
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 250
Effective length of database: 730,157
Effective search space: 182539250
Effective search space used: 182539250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)