BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0789.p (411 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 156 2e-39 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 107 9e-25 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 88 7e-19 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 75 4e-15 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 186/384 (48%), Gaps = 71/384 (18%) Query: 1 MKKSILALAVLGAFGGAAHAQSNITIYGAVDASLSYTNKIGISGKD--AHGND-IAGKDT 57 MKKS+LALAVLGAF GAA AQS++T+YG VD +GI+ +D A ND + G + Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVD--------MGITSQDTGAGANDRLNGVTS 52 Query: 58 GGQMALDSGLIKGSRLGIKGVEDLGGGLKAIFTIENGFNVDSGDAGQKG--VLWGRQATV 115 G Q A SR+G KG EDLG GLKA F +E D+G Q + R ATV Sbjct: 53 GNQSA--------SRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATV 104 Query: 116 GLSGNFGTVLAGRQKDVLDDVGSITSPGDFGGVVSRVHSLNLD---RTNGERVNNSIRYN 172 GLSGNFG V GRQ + D P GG ++ + ++ + + + R++NSI+Y Sbjct: 105 GLSGNFGAVNLGRQVSAIKDAYDAIDPFGDGGTIAPISAIFFNAALKGDNGRISNSIKYT 164 Query: 173 TPDFNGFIGSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQSKMGNANASDVNG 232 + ++GF Y FGEQAG+TG+ ++GL YANGPLNV GY A A Sbjct: 165 SNSYSGFKFGAHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGFK- 223 Query: 233 ASACNGPGKNGDTCLKTWTLAASYQFGPAKVYGSYSHVRLPLTAPRTRFDSRFDSFAAFI 292 P KN K L A+Y FG AK++ +Y DS+ A + Sbjct: 224 ------PVKNSKD--KMTFLGATYDFGVAKLHAAYG-------------DSKNQPVAGNV 262 Query: 293 DPKKLGLYQPAAKGDYTIGGANNESSQTFDIGVNYRLSPALSLISSLQYTRAKF---VRT 349 D K + + +GV+ ++ A S+++S + V+ Sbjct: 263 DNKY----------------------RNYMLGVSAKVGAAGSIMASYTVNDTRTFGGVKA 300 Query: 350 SDGRLLQVNLGAKYELSKRTTTYA 373 +D + + ++LSKRT YA Sbjct: 301 NDRDSKRAGIMYAHDLSKRTNLYA 324 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 107 bits (268), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 167/394 (42%), Gaps = 80/394 (20%) Query: 2 KKSILALAVLGAFGGA---AHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTG 58 + ++ +A L + G A AQ+ +TIYG D ++ Y++ G Sbjct: 4 RNFVVLVAALTLYTGVLQNAGAQNGVTIYGIADVAMVYSSNQG---------------GA 48 Query: 59 GQMALDSGLIKGSRLGIKGVEDLGGGLKAIFTIENGFNVDSGDAGQKGVLWGRQATVGLS 118 + SG + GSR+G KG EDLGGG +AIF +E+GFN+D+G+ L+ RQA VG++ Sbjct: 49 SNTYMRSGNLAGSRIGFKGTEDLGGGTQAIFQLESGFNLDTGEMSSSSTLFNRQAFVGIN 108 Query: 119 GN-FGTVLAGRQKD----VLDDVGSITS--------PGDFGGVVSRVHSLNLDRTNGERV 165 +G + AGRQ + +G S PGD G LD T R Sbjct: 109 NTRYGALTAGRQYTPYYLFVGPIGPTNSLTGATGAHPGDIDG---------LDTT--IRS 157 Query: 166 NNSIRYNTPDFNGFIGSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQSKMGNA 225 NNSI Y +P +NG S + GFGE AG GSG++ Y N LGY ++ N+ Sbjct: 158 NNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISAAIKYDINNWNFALGY--QRLNNS 215 Query: 226 N-----ASDVNGASACNGPGKNGDTCLKTWTLAASYQFGPAKVYGSYSHVRLPLTAPRTR 280 N S A+ P NG + A Y G A+ Y+ ++ + A +R Sbjct: 216 NNPGGVWSPNASANFNTSPVNNGYLSADS----AQYLAGAAR----YTMGKVIVGANASR 267 Query: 281 FDSRFDSFAAFIDPKKLGLYQPAAKGDYTIGGANNESSQTFDIGVNYRLSPALSLISSLQ 340 + R P L+ A D T + Y+++P + Sbjct: 268 VEYR---------PNGNSLFTQKATFD------------TLGLLTGYQMTPVFFVSVGYS 306 Query: 341 YTRAKFVR--TSDGRLLQVNLGAKYELSKRTTTY 372 YT+ K + + Q+ L Y SKRT Y Sbjct: 307 YTKEKAANGISDPAKYHQLALEQTYSFSKRTAIY 340 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 169/395 (42%), Gaps = 71/395 (17%) Query: 18 AHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQMALDSGLIKGSRLGIKG 77 A AQS++ G VDA + + SG D G + ++S ++ S G+KG Sbjct: 26 ALAQSSVQFVGTVDA---FAGSLKNSG-----------DAGSKSVVNSSGMETSWWGVKG 71 Query: 78 VEDLGGGLKAIFTIENGFNVDSGDAGQ--KGVLWGRQATVGLSGNFGTVLAGRQKDVLDD 135 E+LGGGL+A F + + F D+G G+ ++ R A VGLSG+FG V GR D+ + Sbjct: 72 TENLGGGLQAQFALSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGSFGRVSVGR--DLAPN 129 Query: 136 VGSITSPGDFGGVVS----RVHSLNLDRTNGERV-----------NNSIRYNTPDFNGFI 180 + FGG + +H+ + +V +N I Y P GF Sbjct: 130 FIPTLTFSPFGGSFAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFT 189 Query: 181 GSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQS-KMGNANASDVNGASACNGP 239 S+ + FGEQAGK G ++G Y GPL+ G YFQS K+ N S +G S Sbjct: 190 TSLFFQFGEQAGKPGK-NNYGANTMYEQGPLSFG-AYFQSVKVNNPLDSVTSGDSRVFTF 247 Query: 240 GKNGDTCLKTWTLAAS----------YQFGPAKVYGS--YSHVRLPLTAPRTRFDSRFDS 287 T+TLAAS Y K++G+ YS RL A +++D + ++ Sbjct: 248 TPYNQATGATYTLAASRNDTWFVGGAYDLQFMKLFGTLNYSTNRLIGIANDSQYDLKSNT 307 Query: 288 FAAFIDPKKLGLYQPAAKGDYTIGGANNESSQTFDIGVNYRLSPALSLISSLQYTRAKFV 347 +LG P KG A N + S + ++ + Sbjct: 308 V-------QLGTSVPVGKGSVLFSWAR----------TNVKADGDFSAVLGGAGGKSSII 350 Query: 348 RTSDGRLLQVNLGAKYELSKRTTTYAVLRNLRSSD 382 R + +LG Y LSKRT Y+V+ + +D Sbjct: 351 RNT------ASLGYDYFLSKRTDVYSVVSYDKLTD 379 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 103/413 (24%), Positives = 163/413 (39%), Gaps = 100/413 (24%) Query: 20 AQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQMALDS-GLIKGSRLGIKGV 78 A S+I++YG +D+ + + SG G L S G +RLGIKG+ Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASG-------------GSTTKLGSNGEYYNNRLGIKGM 76 Query: 79 EDLGGGLKAIFTIENGFNVDSGDAGQKG-VLWGRQATVGLSGNFGTVLAGRQKDVLDDVG 137 E+LGGGL F +E+GFN +G+ K L+ R +++G++G+FG++ GRQ V Sbjct: 77 ENLGGGLNMHFHLESGFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAV 136 Query: 138 SITSP----------------GDFGGVVSRVHSLNLDRTNGERVNNSIRYNTPDFNGFIG 181 P G+ G VSR +G R +N +Y F F Sbjct: 137 YAYEPFQYRYVHIIPLAGAVAGNLDGRVSRP----FGTVDGPRFSNGAQY-FGKFGSFTA 191 Query: 182 SVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQS--KMGNANASDVNGASACNGP 239 S Y GE G + + +G Y +G VG Y + +G ASD + Sbjct: 192 SAEYIMGEVPGSNRNQAAKAVGLVYNDGTFTVGGAYTRQNPNIGTVAASDYREQNQT--- 248 Query: 240 GKNGDTCLKTWTLAASYQFGPAKVYGSYSHVRLPLTAPRTRFDSRFDSFAAFIDPKKLGL 299 T Y+ ++ G Y +T+ Sbjct: 249 -----------TFGGGYKIDALRITGGYLKTTTAITS----------------------- 274 Query: 300 YQPAAKGDYTIGGANNESSQTFDIGVNYRLSPALSLISSLQYTRAKFVRTSDGRLLQVNL 359 ++ +G Y +PA SL + T + ++ R + + Sbjct: 275 -----------------QAKNIWLGARYDFTPAASLTAGYYRTTLETAQSEIARRNLLIV 317 Query: 360 GAKYELSKRTTTYAVLRNLRSSDMYNVGLSSDRVP-GANRGQTGINAGLIHSF 411 GA Y LS RT+ YA ++ + ++ GL+S +P G+ QTGI+AG+ H F Sbjct: 318 GATYALSPRTSLYA---DIDQAVLH--GLAS--LPSGSQTRQTGISAGISHIF 363 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 829,172 Number of extensions: 38582 Number of successful extensions: 78 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 69 Number of HSP's successfully gapped: 4 Length of query: 411 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 327 Effective length of database: 723,567 Effective search space: 236606409 Effective search space used: 236606409 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)