BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0787.p (345 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 173 1e-44 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 172 2e-44 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 165 3e-42 gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC tr... 156 1e-39 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 143 1e-35 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 146/243 (60%), Gaps = 9/243 (3%) Query: 2 IEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLD 61 IE++ + ++FGN A+ +V L GE+ ++G SG GK+TL+R + L +P G+++LD Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLEL----AGKSKAQIAAKV 117 G+D SA +RE R +G +FQH+ L +V++NIA L + S++ I KV Sbjct: 63 GEDA---SARHVRE--RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKV 117 Query: 118 EPLLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILD 177 LLELV L L DRYP Q+SGGQ+QR+ +ARALA +P+VLL DE ALD + + + Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 LLRKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALI 237 LR+++ EL +T + +TH E ++ D++ +M G V + G +V+ P + Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Query: 238 GDV 240 G+V Sbjct: 238 GNV 240 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 5/238 (2%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 ++EI+ +T+RFG+ V N+ LSI GE F ++G SG GK+TL+R + + P +G+I+L Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAQIAAKVEPL 120 DG DLT + Q R + +FQ++ L +V NIA PLE+A K++I KV+ Sbjct: 63 DGVDLTGVPPEQ-----RVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEA 117 Query: 121 LELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLLR 180 LE V LT RYP ++SGGQ+QRV IARAL PK+LL DE SALD + + L Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 KINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIG 238 + +E+G+T V +TH + R+AVM G + + E ++ PR IG Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIG 235 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 165 bits (417), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 148/242 (61%), Gaps = 3/242 (1%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 MIE++ V++ +G+ + + + S+ KG++ + G SG+GKSTL++T+N L G I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIAL-PLELAGKSKAQIAAKVEP 119 DG + + L R IGM+FQ+F L S+ +N+ L + + G+S+ + A + Sbjct: 61 DGISVGD-PKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLK 119 Query: 120 LLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLL 179 L+ VGL A +D++P Q+SGGQ+QRV IARALA DP +L DE TSALDPE +LD++ Sbjct: 120 YLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVM 179 Query: 180 RKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGD 239 + Q+ G+T++++TH+M +++ +RV M+ G ++E E F R + R + Sbjct: 180 VGLAQD-GMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFLAK 238 Query: 240 VI 241 +I Sbjct: 239 II 240 >gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 280 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 146/233 (62%), Gaps = 6/233 (2%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 +IEI+ + +FG+V N++L+I +GEI ++G SG+GK+ L+R + LN PT G + + Sbjct: 23 IIEIENLCTQFGDVIVHENLNLTINQGEIVSLVGGSGSGKTVLLRQMLGLNHPTRGTVRV 82 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPL-ELAGKSKAQIAAKVEP 119 G+D+ ++ QL++ R GM+FQH L SS +V+DN+A P+ EL K I Sbjct: 83 FGEDINRITPQQLQQLRNRWGMLFQHGALFSSFTVFDNVAQPMRELRVLPKQLIRDAALL 142 Query: 120 LLELVGLTALRD-RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDL 178 L++ G+ + P+ +SGG +RV +ARALA +P++L DE T+ LDP + S +DL Sbjct: 143 KLQMAGIGPEHALKMPSDLSGGMIKRVALARALALEPELLFLDEPTAGLDPNASESFVDL 202 Query: 179 LRKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVI---EQGEVLEVFRQP 228 +R + E+ LT+V++TH ++ + + RVAV+ ++I E G+V+E F+ P Sbjct: 203 IRTLRDEMQLTVVMVTHDLDTLFALSSRVAVLADKRIIAYCEPGKVVE-FKHP 254 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 4/230 (1%) Query: 14 VEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSASQL 73 V AV V L+I GE+ G++G SG GKSTL R L+ +SG + G +L SA++ Sbjct: 41 VHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAAER 100 Query: 74 REARRGIGMIFQ--HFNLLSSRSVYDNIA-LPLELAGKSKAQIAAKVEPLLELVGL-TAL 129 R+ + G+ MIFQ + +L + D I P+ ++ V LL+ VGL AL Sbjct: 101 RQQQLGMQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTVGLDPAL 160 Query: 130 RDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLLRKINQELGLT 189 R+P Q SGGQ+ R+GIARALA P++L+ DEA +ALD +L+L K+ EL LT Sbjct: 161 ARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLT 220 Query: 190 IVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGD 239 + I+H + V++ + DRV +M G+++E E+F +P H T AL+ Sbjct: 221 YLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVALLAS 270 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 599,890 Number of extensions: 23819 Number of successful extensions: 242 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 48 Length of query: 345 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 263 Effective length of database: 730,157 Effective search space: 192031291 Effective search space used: 192031291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)