BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0784.p
         (320 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095727|ref|YP_001100802.1| putative GTPase [Herminiimonas ...   464   e-132

>gi|134095727|ref|YP_001100802.1| putative GTPase [Herminiimonas
           arsenicoxydans]
          Length = 296

 Score =  464 bits (1193), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 220/297 (74%), Positives = 254/297 (85%), Gaps = 3/297 (1%)

Query: 21  MEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILNKTDMADPVATQAWIDYYNSQ 80
           MEKVDM+IEV+DAR+PQASCNPMIE+LR  RQRPCLKILNK+D+ADP ATQ W+D+YN Q
Sbjct: 1   MEKVDMIIEVLDARVPQASCNPMIEELRTFRQRPCLKILNKSDLADPAATQQWLDFYNKQ 60

Query: 81  KGVTAVALSCKKPSDVARVPKLAMQVAPHRGTALKPLRMMIMGIPNVGKSTLMNALLKKR 140
           K V AVALSCKKPSDVA++P L+M++APHRGTALKPLR+MIMGIPNVGKSTLMNALLKKR
Sbjct: 61  KNVHAVALSCKKPSDVAKIPALSMKIAPHRGTALKPLRIMIMGIPNVGKSTLMNALLKKR 120

Query: 141 VAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPSDGLMLAASHAVGSNALIEEE 200
           VA VGDEPAVTK QQRLYLGNN+VLTDTPGM+WPKI +PSDGLMLAASHA+GSNALIEEE
Sbjct: 121 VAKVGDEPAVTKMQQRLYLGNNIVLTDTPGMMWPKIAYPSDGLMLAASHAIGSNALIEEE 180

Query: 201 VATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAKRGFRLKGGDYDFEKASHTFL 260
           VATFLAD++L RYP L+ ARYG  TEG+DGV+V+EGVA +RG R+KGG+ D EKA+H FL
Sbjct: 181 VATFLADIILARYPALVAARYGMKTEGIDGVSVIEGVAVRRGLRIKGGELDLEKAAHIFL 240

Query: 261 QDYRSGALGRISLETPQSRAELLANYRSTDN-PDALPAEDEDDEEEDFDWRDAADHR 316
           QDYR+G LGRISLETP+SR ELL  ++   +  D      ED  EE+ D  DA  HR
Sbjct: 241 QDYRTGLLGRISLETPESRVELLTTFQPPPSLSDVADESAEDAPEENRD--DAFSHR 295


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 547,585
Number of extensions: 21401
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 238
Effective length of database: 730,157
Effective search space: 173777366
Effective search space used: 173777366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)