BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0782.p (290 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 76 2e-15 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 69 3e-13 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 65 5e-12 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 60 2e-10 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 55 6e-09 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 31/300 (10%) Query: 8 IFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAGELAGAA 67 F + + G+L AA++L + +V +RLA +E L RL RT TP GE+ A Sbjct: 9 FFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIYLAD 68 Query: 68 ASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKVVLSTS 127 +++ E L++++ G + G+++++AT R + P L + +P + V L + Sbjct: 69 GARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQLHLT 128 Query: 128 TQLTNLTKREADIAVRTVR-PDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPGTGLKGH 186 + NL ++ D +R + PDA L AR + + A+ AY+K G+P L+ H Sbjct: 129 DRPVNLVEQGFDADIRFGQLPDA-RLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQKH 187 Query: 187 DVVIYPRSVSPVKSEQISGESITHANVAMEVSTGLVMYDCLQAGVGIGELPTHMGDKASG 246 + ++ S S S + ++V L D GE T G Sbjct: 188 NCILLRESDEIYGSWHFSSGT---KQETVKVRGSLSAND--------GECATAWALDGQG 236 Query: 247 LVRIWPQRATPY------------------DMWLVLHSDLNRTARVRAVADAIIAAFEAH 288 +V PY D+++V + + +A+ RA+ D ++ AFE+H Sbjct: 237 IVVRSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFESH 296 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 120/265 (45%), Gaps = 10/265 (3%) Query: 1 VDWDNARIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPA 60 ++ D+ + F+A+ GTL AA+ L + V R L+ LE+ L L RT T Sbjct: 3 INSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDE 62 Query: 61 GELAGAAASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNI 120 G L A + ++ + ++ ++ G +R+ A + ++P + R +P I Sbjct: 63 GRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQI 122 Query: 121 KVVLSTSTQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPG 180 + L+++ Q+ +L + DIA+R L AR L + A+ Y+++ G+P Sbjct: 123 TLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTP 182 Query: 181 TGLKGHDVVIYPRSVS----PVKSEQISGESITHANVAMEVSTGLVMYDCLQAGVGIGEL 236 L GH ++ + + S P++ GE +T A+ S+G + G GI L Sbjct: 183 EQLAGHQLLGFLQFESGNTWPIR--HAGGEGLT-VTPALFASSGETLRALALHGQGIASL 239 Query: 237 PTHM--GDKASG-LVRIWPQRATPY 258 +M D A+G LVRI T Y Sbjct: 240 ADYMTRDDIAAGRLVRILENYYTGY 264 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 64.7 bits (156), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 21/290 (7%) Query: 7 RIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAGELAGA 66 R+F A + + AA +L + R + LE+++G LF R G T G Sbjct: 9 RLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFGTQLAE 68 Query: 67 AASQMEQGAEQLQRQMQGL-DERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKVVLS 125 A +M G ++L L D L G+VR+ A R L+ L L +++P IK+ L Sbjct: 69 HAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYPGIKLELG 128 Query: 126 TSTQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLP-------- 177 + L ++ ++ DI VR L+AR + ++ + A V RG P Sbjct: 129 VTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKPITPQDLLG 188 Query: 178 EPGTGL-KGHDVVIYPRSVSPVKSEQISGESITHANVAMEVSTGLVMYDCLQAGVGIGEL 236 P T L G+ I+P + + ++ ++ + +E D + AG+G G+L Sbjct: 189 LPTTALMDGNTGRIWPWYFADSQPLTLTSPTLVSDDPEVEC-------DAVLAGIGYGQL 241 Query: 237 PTHMGD---KASGLVRIWPQ-RATPYDMWLVLHSDLNRTARVRAVADAII 282 H + ++ LV + + P+D+++ AR+R V D I+ Sbjct: 242 SNHQAEPHIRSGRLVTVLDDYQPVPWDLYVYRPQRGPVPARIRLVFDRIV 291 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 13/210 (6%) Query: 32 VGRRLAALEKSLGARLFLRTPSGYVPTPAGELAGAAASQMEQGAEQLQRQMQGLDERLCG 91 VGRR+ ALEK LG RL R+ T G + +M +Q + + ++ G Sbjct: 33 VGRRIDALEKRLGVRLLHRSTRRLALTEEGSVYLEHCRKMLSELDQAESTLSAGHNKVSG 92 Query: 92 VVRLAATDLTARYFLMPALQHLRQEHPNIKVVLSTSTQLTNLTKREADIAVRTVRPDAPD 151 + ++A R + P Q+ ++HP +K+ + + ++ +L + D+ +R P+ Sbjct: 93 HLIISAPASFGRQHVAPYAQNFLEQHPGLKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPN 152 Query: 152 LIARHLKRLYTGIYAAKAYVKKRGLPEPGTGLKGHDVVIYPRSVSPVKSEQISGESITH- 210 +A L + Y KK G P+ L H+ + + ++ Q G H Sbjct: 153 FVAIKLAANKRVVCGTPDYFKKHGKPKTLDDLAKHNCLAF-----NLQGGQQRGWYFNHR 207 Query: 211 -------ANVAMEVSTGLVMYDCLQAGVGI 233 A +++ + G +++ + G+GI Sbjct: 208 GKTVSVRAQGSLDCNDGELLHRWMSEGLGI 237 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 54.7 bits (130), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 46/305 (15%) Query: 7 RIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAG----E 62 + F+A+ + A +LDI +A V + + LE LG RL RT T +G E Sbjct: 2 KTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYYE 61 Query: 63 LAGAAASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKV 122 + +++ AEQ+ Q + G +++A + P L + +P +++ Sbjct: 62 RCLQILADVDE-AEQVAAQSAAMPR---GTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRL 117 Query: 123 VLSTSTQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPGTG 182 ++ + + +L + D+A+R LIAR L + A+ AY++ G P+ Sbjct: 118 DIALADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPED 177 Query: 183 LKGHDVVIYPRSVSPVKSEQISGESITHANV----AMEVSTG------------------ 220 LK H + Y S S E + G+ T A V M + G Sbjct: 178 LKQHACLNY--SYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPH 235 Query: 221 LVMYDCLQAGVGIGELPTHMGDKASGLVRIWPQRATPYDMWLVLHSDLNRTARVRAVADA 280 ++ D +QAG + EL D G+ I+P R + +A+VR D Sbjct: 236 FIVADDVQAGRLV-ELMKDESDTELGIYAIYPSRK-------------HLSAKVRTFVDY 281 Query: 281 IIAAF 285 ++A Sbjct: 282 LVACM 286 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 525,035 Number of extensions: 20740 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 6 Length of query: 290 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 209 Effective length of database: 733,452 Effective search space: 153291468 Effective search space used: 153291468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)