BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0781.p
         (313 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095790|ref|YP_001100865.1| putative histone deacetylase/Ac...   256   1e-69
gi|134094107|ref|YP_001099182.1| putative histone deacetylase [H...   113   2e-26

>gi|134095790|ref|YP_001100865.1| putative histone
           deacetylase/AcuC/AphA family protein [Herminiimonas
           arsenicoxydans]
          Length = 310

 Score =  256 bits (653), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/315 (45%), Positives = 189/315 (60%), Gaps = 10/315 (3%)

Query: 1   MTTAIYTHADCQRHEMGDWHPETPARLEAIEDQLILSRIDHFLDRRDAPLADPAELERVH 60
           MTT IYTH  C  H+ G  HPE+P RL+A+   L     D   + R+AP+    ++  +H
Sbjct: 1   MTTLIYTHEACLNHKPGPSHPESPERLKAVLRALRTPEFDA-AEWREAPMGTREQVLMIH 59

Query: 61  TAAAVDYVREHSHALSLSGEHYHSIDG-DTLLNKHSWRAALRAAGAAVAATDAVLAGELD 119
           T A V+ V + S       + Y  +DG DT+++  S  A +R  GAA A  DAV+  E+ 
Sbjct: 60  TEAFVEDVEDAS-----PNQGYMPLDGGDTVMSPGSLEAVMRCVGAACAGVDAVMGKEVR 114

Query: 120 NAFCAVRPPGHHATHGKAMGFCLFNNVAVAARHALDVHGLERVAVIDFDVHHGNGTEDIF 179
           N FCA RP GHHA   KAMGFC++N  A+AA +A DVH LERVAV+DFDVHHGNGT+  F
Sbjct: 115 NVFCATRPCGHHAEPNKAMGFCIYNQAAIAAAYAYDVHKLERVAVVDFDVHHGNGTQAAF 174

Query: 180 AHDPRVLMVSFFQHPFYPFSG---DAPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHA 236
              P +   S  Q  FYP +G   +     +IVNVP+P   D +  R+ +  K LPA+ A
Sbjct: 175 YDRPELFYASSHQSHFYPGTGLEAETGISHNIVNVPLPRGCDSAMFREQIAAKMLPAIRA 234

Query: 237 HQPQMIFISAGFDAHREDDMGQLGLVEADYAWITRQIMKIADQYARGRIVSCLEGGYNLS 296
             P+++ ISAGFDAH  D +  L L + D+ W+TR++MKIAD    GR+VS LEGGY+L 
Sbjct: 235 FNPEILIISAGFDAHHLDPLAGLNLQDDDFDWVTRELMKIADDCCEGRVVSILEGGYSLE 294

Query: 297 ALGRSVVAHLKVLAD 311
            L  S   H+K L D
Sbjct: 295 GLASSTAIHVKALMD 309


>gi|134094107|ref|YP_001099182.1| putative histone deacetylase
           [Herminiimonas arsenicoxydans]
          Length = 434

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 132/292 (45%), Gaps = 50/292 (17%)

Query: 20  HPETPARLEAIEDQLILSRIDHFLDRRDAP--LADPAELERVH-TAAAVDYVREHSHALS 76
           HPE   RL   +DQ+    +  F + ++    +A   +++RVH     +D +   SH   
Sbjct: 21  HPEREERLLYTQDQVFEEGLLDFDNIKEFKPGVATAEDIQRVHFCVPGIDEIVHASH--- 77

Query: 77  LSGEHYHSIDGDTLLNKHSWRAALRAAGAAVAATDAVLAGELDNAFCAVRPPGHHA---T 133
                                  L A G  + A D V+  E+DNAF  VRP GHH+    
Sbjct: 78  -----------------------LIAVGGCITAADKVMTKEVDNAFALVRPCGHHSFRVV 114

Query: 134 HGKAMGFCLFNNVAVAARHALDVHGLERVAVIDFDVHHGNGTEDIFAHDPRVLMVSFFQ- 192
           HG + GFC  N  A+   +    +G++++A+ID D HHG+G++DIF HDP  L +S  Q 
Sbjct: 115 HG-SRGFCTLNMEAIMVEYIRHKYGVKKIAIIDTDCHHGDGSQDIFWHDPNTLFISMHQD 173

Query: 193 -HPFYPFSGDA-----PTE-SHIVNVPVPAYSDGSAVRQLVTEKWLPALHAHQPQMIFIS 245
               YP SG A     P      +N+P+P  +       ++ E  +P L   +P +I  S
Sbjct: 174 GRTLYPGSGFADELGGPNAFGTTINLPMPPDTCEEGFLYVLDEIVMPILDEFKPDLIINS 233

Query: 246 AGFDAHREDDMGQLGLVEADYAWITRQIMKIADQYARGRIVSCLEGGYNLSA 297
           AG D H  D +  +      YA + +++            ++ LEGGY++  
Sbjct: 234 AGQDNHYSDPITNMKFTAHGYAVLNQRL---------APDLAVLEGGYSIET 276


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 631,859
Number of extensions: 25419
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 231
Effective length of database: 730,157
Effective search space: 168666267
Effective search space used: 168666267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)