BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0780.p
         (398 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095732|ref|YP_001100807.1| membrane-bound lytic murein tra...   453   e-129

>gi|134095732|ref|YP_001100807.1| membrane-bound lytic murein
           transglycosylase B [Herminiimonas arsenicoxydans]
          Length = 367

 Score =  453 bits (1166), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 249/318 (78%), Gaps = 4/318 (1%)

Query: 82  EFVNFNEWKDVGRFIDEMVERNQFQRSDLNALFAQTRYVDTAIQLIKPAPSNKPKNWTAY 141
           EF NFN+W+DV  FID M E+N F + +L    ++T YVD+AIQL+KPAP  KPKNW AY
Sbjct: 51  EFANFNQWRDVADFIDRMAEKNGFDKKELQNTLSKTHYVDSAIQLMKPAPPGKPKNWAAY 110

Query: 142 RTRFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIVGIIGVETVYGRNTGNFRVMDV 201
           R+RFVEPVRI+AGV FWNTY  AL RAE  YGVP EIIV IIGVETVYGRNTGNFRVMD 
Sbjct: 111 RSRFVEPVRIDAGVAFWNTYADALTRAEKLYGVPAEIIVAIIGVETVYGRNTGNFRVMDA 170

Query: 202 LTTLAFDYPNTPNREARMAFFRGELENTLLLAREAGIDPMSLRGSYAGAIGWPQFMPGSI 261
           +TTLAF YP+TPNR  RMA+FRGELENTLL AR+  IDP SL GSYAGAIGWPQFMPGSI
Sbjct: 171 ITTLAFAYPDTPNRSTRMAYFRGELENTLLFARDEKIDPFSLLGSYAGAIGWPQFMPGSI 230

Query: 262 REYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGEPVAFPVSVSADNRQWENMLNQ 321
           R++AVDFDG+G IDLRNSPVDAIGSVA++L  HGW+ GEP  FP +V      W+  + Q
Sbjct: 231 RKFAVDFDGNGHIDLRNSPVDAIGSVANFLVQHGWRTGEPAVFPATVDM-TENWQRFIGQ 289

Query: 322 GLEAKYSADELHAAGISTPPL--PAGMRFGLVDLQNGTGPTEYWIATNNFYAITQYNRSY 379
           GLEAK+S  EL AAG+ TP +  P+ M FGLVDLQNG   +EYW+   NF+AITQYNRS+
Sbjct: 290 GLEAKFSVAELKAAGV-TPTIEPPSDMLFGLVDLQNGAEASEYWLGAPNFFAITQYNRSF 348

Query: 380 FYAMSVADLGHAVAVARN 397
           FYAMSV DL  AV  ARN
Sbjct: 349 FYAMSVIDLSRAVRAARN 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 671,044
Number of extensions: 26936
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 314
Effective length of database: 723,567
Effective search space: 227200038
Effective search space used: 227200038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)