BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0779.p
         (723 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de...   488   e-139
gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep...   119   5e-28
gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto...    86   8e-18

>gi|134093326|ref|YP_001098401.1| putative outer membrane
           TonB-dependent receptor protein [Herminiimonas
           arsenicoxydans]
          Length = 716

 Score =  488 bits (1256), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/695 (39%), Positives = 410/695 (58%), Gaps = 22/695 (3%)

Query: 39  LPTINVTASGAGKEGARVRSAAVAGFDDAPLLDTPASVAVVTGAQMRDQQSRVLSDVVKN 98
           LP + V  S +  +G   R+A+V GF DAPL +TPAS++V+T  QM+D+  R  +D VK 
Sbjct: 34  LPEV-VVMSDSESDGI-ARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDAVKY 91

Query: 99  DASINENYAPVGYYENFSIRGVTLDPASAYRIDGLTVAGEQTIALENKERVEFLKGVAGL 158
           DAS+   Y  VG  + FSIRG TLD  S YR DG+ V     I +ENKER E LKG+AGL
Sbjct: 92  DASVQNAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPMENKERFEVLKGLAGL 151

Query: 159 QAGVSSAGGIVNYVTKRPAN--VRSITLGSDSYGSRYLATDLGALFGEQQQFGLRLNAAH 216
           Q G++S+GGI+NYV KRP N  +RS+TL +   G+ Y A DLG    + ++FG R+NAA 
Sbjct: 152 QVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGR-SDDKRFGYRINAAG 210

Query: 217 EDIHSYVNNGDGWRDFASLATTWALSSKTLLQFDAEYQQKAQHSVAGYQLLG-GTTLPSG 275
            DI SYV   +G R F S A  W LS K LLQ D +Y  K+Q SV G+QLLG    +P+G
Sbjct: 211 ADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLSVPGFQLLGPAQRIPTG 270

Query: 276 VSPKTMLTPQSWAQPVRDSSLNYRLRLDTEFNANWRGYVQAGRSRAVIDDYLAFPYGS-G 334
           VS KTML  QSW+ PV D + N  ++ + E N  W   +QA +     DD +A   G   
Sbjct: 271 VSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHTTLQANKFELRRDDAVALASGCVA 330

Query: 335 GGASSTFAANGDFDVYDYRVPDDERRNDDAQAVMIGKFATGWLQHELTVGLEMSRRVVDK 394
            G S  + A+G F++YD R  +D+R     QA++ GKF  G ++H+LT+G+    R  + 
Sbjct: 331 EGLSPGYCADGTFNMYDLRRDNDKRTVMSTQAMLQGKFNAGTIKHDLTLGMSTMNRRDNY 390

Query: 395 SDGISVLVGSGNIYTGTPALAPATTLP-GPAYRNLDSRQKALFLSDRLQFSERWQVIAGG 453
           ++ +    G+G+IY   P   P T  P  P        ++++F+ D L  ++++++ AG 
Sbjct: 391 ANFLFESAGTGSIY--YPKYNPLTLGPTNPVSLRRKDEERSVFVQDVLTLNDKFKLHAGM 448

Query: 454 RQVWLNEQAFGADGSVTRNTARNLFLPQLALIYKPAQNMSLYGSYAETLTLGSSAPFWVS 513
           R   L    F + G + R+T ++  LP +AL++ P  N S+YG+Y++ L  G+  P  + 
Sbjct: 449 RYTQLQRTQFTSSGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQGLEPGAEVPSGLV 508

Query: 514 NFPTTLPPSVARQLEAGVKYDVSPELALTAAIFRIRKAYEFQQPDNSSAGFTYVQQGRQT 573
           N  T L P+ +RQ+E G+K D+S ++++ AA+F+I +       +N ++G  YV  G++ 
Sbjct: 509 NEETVLDPNKSRQVEIGIKADLSQDISVAAALFQIHR------DNNYTSGLNYVTAGKEV 562

Query: 574 NTGIELGASGKLAPRLAVGASVSATRARASDTGTAAYDDQQVVNVPRLRSSVYADYAVPS 633
           + G+EL A G+    L +GAS++  +A A +TG A  + +++ NVP L+S+V+ DY +P 
Sbjct: 563 HRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRIGNVPVLKSAVFMDYTLPQ 622

Query: 634 LEGLNLLGSWLYSSSKPATRDGSVS-----LPAVHVFNAGLRYRMRINTHTATLRANVDN 688
           +  L L   W+YSSSK    +  +S     +   HV N G +Y+ +++    T R  +DN
Sbjct: 623 MPALKLNAMWIYSSSKVFAPNAQISELNKKVDGYHVLNVGAQYKTKVSGTKTTFRFGIDN 682

Query: 689 LFDKRYWKDAGQYLGDGYVHLGAPRTVRVSLQYDF 723
           +FDK YW DA    G GY+  GAPR  R+S Q+DF
Sbjct: 683 VFDKFYWGDASNAYG-GYLIPGAPRVFRLSAQFDF 716


>gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor
           [Herminiimonas arsenicoxydans]
          Length = 725

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 191/748 (25%), Positives = 303/748 (40%), Gaps = 97/748 (12%)

Query: 20  LGLSAAARAADTPDDKGEA-------LPTINV-----TASGAGKEGARVRSAAVAGFDDA 67
           +GL+  +    +P  + E+       LP +NV     TA+G    G R   ++ A   D 
Sbjct: 31  VGLNGGSSLQASPASQNESSAPAVTTLPAVNVSGVQETATGP-VIGYRATRSSTATKTDT 89

Query: 68  PLLDTPASVAVVTGAQMRDQQSRVLSDVVKNDASINEN-YAPVGYYENFSIRGVTLDPAS 126
            L +T  +V VVT  Q+ DQ +  L D +   A +  + Y      ++  +RG + D   
Sbjct: 90  SLAETLQAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRTDSVLVRGASPD--- 146

Query: 127 AYRIDGLTVAGEQTIALENK-----ERVEFLKGVAGLQAGVSSAGGIVNYVTKRPANVRS 181
              IDGL  A +   +         ER+E L+G A +  G  S GG+VN V+KRP     
Sbjct: 147 -VYIDGLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQ 205

Query: 182 ITLGSD--SYGSRYLATDLGALFGEQQQFGLRLNAAHEDIHSYVNNGDGWRDFASLATTW 239
             +G    ++G + L  D+     E +Q+  RL A   +  + V+     R   + + TW
Sbjct: 206 GEVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTW 265

Query: 240 ALSSKTLLQFDAEYQQKAQHSVAGYQLLGGTTLPS--GVSPKTMLTPQSWAQPVRD-SSL 296
             +  T L     YQ+    S + +    G   P+  G+ P +    +   +   D  SL
Sbjct: 266 KPNGVTSLTLQGLYQRDRTGSTSQFLPWAGMLTPNVNGMIPTSRFIGEPGDRYDTDRQSL 325

Query: 297 NYRLRLDTEFNANWRGYVQAGRSRAVIDDYLAFPYGSGGGASSTFAANG-DFDVYDYRV- 354
            Y    + + N NW  + Q  R      DY      S     ST    G   D  + R+ 
Sbjct: 326 GYLF--EHQLNDNWT-FRQNFRYAVNEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLI 382

Query: 355 ---PDDERRNDDAQAV---MIGKFATGWLQHELTVGLEMSRRVVDKSDGISVLVGS---- 404
               DD         +   +  K  TG LQH+L  GL+ +R   D+  G  +        
Sbjct: 383 GRYADDSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDRQSGFGMDTIDVYAP 442

Query: 405 --GNIYTGTPALAPATTLPGPAYRNLDSRQKALFLSDRLQFSERWQVIAGGRQVWLNEQA 462
             GN    T A  P +            RQ  L+L D+++  + W V AG R   +N   
Sbjct: 443 VYGNGVVATLADDPQSV----------QRQIGLYLQDQIKIGKNWIVSAGLRHDRVNNAL 492

Query: 463 FGADGSVTRNTARNLFLPQLALIYKPAQNMSLYGSYAETLT--LGSSAPFWVSNFPTTLP 520
            G++   +R T +     ++ ++Y      S Y SY+E+ T   G++A      +     
Sbjct: 493 AGSEDEESRATTK-----RVGVMYLLENGWSPYVSYSESFTPVAGTNA------YDQRFK 541

Query: 521 PSVARQLEAGVKY-DVSPELALTAAIFRI-RKAYEFQQPDNSSAGFTYVQQGRQTNTGIE 578
           P    Q+E GVKY  V+     TAAI++I  K      P N       +Q G+  N G+E
Sbjct: 542 PVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDPSNP---LNQIQVGQTKNRGVE 598

Query: 579 LGASGKLAPRLAVGASVSATRARASDTGTAAYDDQQVVNVPRLRSSVYAD--YAVPSLEG 636
           L     + P + V A  + T             D+Q+  VPR +++ +    +++  + G
Sbjct: 599 LEWKASITPTIDVLAHYNYTDL-----------DEQLDEVPRHQAAAWGKWRFSIGGVSG 647

Query: 637 LNLLGSWLYSSSKPATRDG-SVSLPAVHVFNAGLRYRMRINTHTATLRANVDNLFDKRYW 695
             L     Y SS    RDG + + P+V + +A L +    +T       NV+NL DK Y 
Sbjct: 648 FALGAGARYMSS---FRDGVAPTTPSVTLLDALLSW----DTMNWRYALNVNNLTDKVY- 699

Query: 696 KDAGQYLGDGYVHLGAPRTVRVSLQYDF 723
                 L  G    GA R+  ++  Y F
Sbjct: 700 --NATCLSRGDCWYGARRSAVLTATYKF 725


>gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor
           Fiu [Herminiimonas arsenicoxydans]
          Length = 759

 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 165/381 (43%), Gaps = 38/381 (9%)

Query: 365 QAVMIGKFATGWLQHELTVGLEMSRRVVDKSDGISVL--VGSGNIYTGTPALAPATTLPG 422
           Q  +  KF TG ++H L  G+E+S     +S G + L  + + N+Y   P L      P 
Sbjct: 395 QTNLTAKFDTGAVKHSLVTGVELSSEK-QRSLGYAGLGTISAANLYNPNPYLVRTGYNPV 453

Query: 423 PAYRNLDSRQKAL--FLSDRLQFSERWQVIAGGRQVWLNEQAFGADGSVTRNTARN---- 476
               N + R   L  +L D L+ S +WQ I GG +V   +  + +     RN   N    
Sbjct: 454 GNGTNSEGRTNTLSVYLFDTLELSPQWQ-INGGVRVDHYDTKYESSTLNVRNATLNKSGT 512

Query: 477 LFLPQLALIYKPAQNMSLYGSYAETLTLGSSAPFWVSNFPTT-----LPPSVARQLEAGV 531
           L   +L  +YKP ++ SLY SYA +      + F +S+   +       P   R  E G 
Sbjct: 513 LLNWKLGGLYKPTEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGA 572

Query: 532 KYD-VSPELALTAAIFRIRKAYEFQQPDNSSAGFTYVQQGRQTNTGIELGASGKLAPRLA 590
           K+D +   L LT AI+R     E +   N++ GFT  Q G++   G+ELG  G++     
Sbjct: 573 KWDLLDKRLGLTTAIYRTDVKNEIE--GNATDGFT--QTGKKRVEGVELGVVGEITSAWQ 628

Query: 591 VGASVSATRARASDTGTAAYDDQQVVNV---PRLRSSVYADYAVPSLEGLNLLGSWLYSS 647
           V A    TR R   T  A  +      +   P+   + +  Y +P   G  + G   +  
Sbjct: 629 VSAGY--TRMRTDVTAGAIVNQDGTSGLSYTPKQAFTAWTTYKLPG--GFTIGGGARFVD 684

Query: 648 SKPATRDGSVSLP----AVHVFNAGLRYRMRINTHTATLRANVDNLFDKRYWKDAGQYLG 703
           +    +DG+V  P    +  V++A   Y +  N    +L+ N+ NL DK Y     +   
Sbjct: 685 ALHKPKDGAVGTPQFVESYWVYDAMASYEVSKN---VSLQLNLYNLADKDYVASINK--- 738

Query: 704 DGYVHL-GAPRTVRVSLQYDF 723
            GY +  G  R+ R+S    F
Sbjct: 739 SGYRYTPGIERSARLSANIKF 759


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,329,144
Number of extensions: 54524
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 4
Length of query: 723
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 634
Effective length of database: 707,092
Effective search space: 448296328
Effective search space used: 448296328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)