BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0776.p
         (196 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095734|ref|YP_001100809.1| hypothetical protein HEAR2566 [...   235   9e-64

>gi|134095734|ref|YP_001100809.1| hypothetical protein HEAR2566
           [Herminiimonas arsenicoxydans]
          Length = 188

 Score =  235 bits (600), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 142/180 (78%), Gaps = 2/180 (1%)

Query: 10  STP--SDNEVVALTRAWLEQAVIGLNLCPFAKSVHVKDQVRYHVSRHQDWDSLAAELEEE 67
           STP  S + +VA T+AWLE+AVIGLNLCPFAK+VH+K+Q+RY VS+ ++ D+L  +LE E
Sbjct: 4   STPPASPDAIVAATQAWLEKAVIGLNLCPFAKAVHIKNQIRYVVSKARNVDALLDDLEAE 63

Query: 68  LCFLAKADPEQVDTTLFIIPLALAEFLEYNDFLDWADRILERLELDGELQIASFHPHYQF 127
           L  L  AD   +DT L I P  L +FL+YNDFL+ AD ++E LELDGE+QIASFHPHYQF
Sbjct: 64  LKTLHAADAANIDTILLIHPDVLQDFLDYNDFLEIADELVEELELDGEIQIASFHPHYQF 123

Query: 128 ADAQADDIENYSNRSPFPILHLLRESSIDRAVAAYPDAAAIFEKNMVTLRKLGLTGWNML 187
           A   A+DIENY+NRSP+PILHLLRESSI+RAV A+P A  IFEKNM TLR+LGL GW  L
Sbjct: 124 AGTAANDIENYTNRSPYPILHLLRESSIERAVEAFPQAETIFEKNMETLRELGLEGWRQL 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 315,696
Number of extensions: 10034
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 119
Effective length of database: 746,632
Effective search space: 88849208
Effective search space used: 88849208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)