BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0772.p (550 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 763 0.0 gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 108 9e-25 gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 102 5e-23 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/550 (69%), Positives = 429/550 (78%), Gaps = 8/550 (1%) Query: 3 THDISNQAPDLCDYNLYRNDAALVEAVQREGAHWHDCTLASQGEALGTAEMSELAALANQ 62 TH++SNQAPDL DYNLY +D AL VQRE A WH+ L G LG + +L LAN Sbjct: 5 THEVSNQAPDLHDYNLYTSDLALAAGVQREQAGWHEQDLIRYGAELGMQQTLQLGQLANH 64 Query: 63 HSPVLRTHDRTGHRIDVVDFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFLHA 122 H P L THDR GHRID V+FHP+WH LL RR LHA+PW Q G H AR A Y+L A Sbjct: 65 HLPELHTHDRFGHRIDTVEFHPSWHQLLAMQRRENLHAMPWSQARAGVHVARTAAYYLQA 124 Query: 123 QVEAGSLCPTTMTFAAIPVLQQEAALFAQLRTRLFSREHDGRDLPMMHKRSILIGMGMTE 182 QVE+GSLCPTTMTFAAIP+LQQE ALFA L+ +LF+REHD RDLP K S+LIGMGMTE Sbjct: 125 QVESGSLCPTTMTFAAIPLLQQEPALFAALQAKLFAREHDPRDLPWAQKHSMLIGMGMTE 184 Query: 183 KQGGSDVRSNASVAMPADALQQGRGAAYLLTGHKWFFSAPMCDAHLMLARTENGLSCFFV 242 KQGGSDVRSN +VA GRGA Y LTGHKWFFSAPMCDAHL+LARTENGLSCFFV Sbjct: 185 KQGGSDVRSNTTVARAVHG--SGRGADYALTGHKWFFSAPMCDAHLVLARTENGLSCFFV 242 Query: 243 PRWLPDGKRNPVLIQRLKDKLGNRSNSSSEVEFEEALGIMVGEDGRGIPTIIEMANHTRL 302 PRW PDG RN VLIQ+LKDKLGNRSNSSSEVEF++A G+MVGE+GRGIPTIIEMANHTRL Sbjct: 243 PRWRPDGSRNAVLIQQLKDKLGNRSNSSSEVEFQDAYGVMVGEEGRGIPTIIEMANHTRL 302 Query: 303 DCVIGSTALMRQALVQAIHHARHRNAFGRLLAEQPLMRAVLADLALESEAATMLMLRL-- 360 DCVIGS LMR ALVQAIHHARHR+AFG LAEQPLMR VL+DLALESEAAT+LMLRL Sbjct: 303 DCVIGSAGLMRNALVQAIHHARHRSAFGHPLAEQPLMRNVLSDLALESEAATLLMLRLAR 362 Query: 361 --AHAFDAPDDPLQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARLYR 418 + DAPDD L+RAW+RI+TPAAKFW+CKR LEF+GECMEVWGGNGY+E PMAR++R Sbjct: 363 AADASRDAPDDLLERAWRRILTPAAKFWVCKRVLEFSGECMEVWGGNGYIENAPMARMFR 422 Query: 419 EAPVNSIWEGSGNVMCLDVLRAIEHETEGFALLLMALDDAAAVHPALAQRVRDLKQWLAA 478 EAPVNSIWEGSGNVMCLDVLRAIE E EGFALLL L D+A H L + L LA Sbjct: 423 EAPVNSIWEGSGNVMCLDVLRAIEREAEGFALLLQNLQDSAGTHAGLRALIASLHNDLAL 482 Query: 479 PEEQRQAGARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDRDGGRVYGTLAVTSLAA 538 P +Q++ ARR Q+LVLA Q LML+HAP AEAF+ASR D + GRV+GTL T+L Sbjct: 483 PPQQQEMQARRFAQRLVLAAQASLMLQHAPASVAEAFIASRIDAECGRVFGTLPATAL-- 540 Query: 539 QQAILQRAWP 548 Q +L RAWP Sbjct: 541 QYDMLARAWP 550 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 144/295 (48%), Gaps = 40/295 (13%) Query: 178 MGMTEKQGGSDVRSNASVAMPADALQQGRGAAYLLTGHKWFFSAPMCD-----AHLMLAR 232 M +TE Q GSD+ S A+P QG G Y ++G K F + D HL+LAR Sbjct: 161 MNLTEPQAGSDLAMVRSRAVP-----QGDGT-YKISGTKIFITYGEHDMAENIVHLVLAR 214 Query: 233 TEN------GLSCFFVPRWLPD-----GKRNPVLIQRLKDKLGNRSNSSSEVEFEE---A 278 T + G+S F VP++L + G RN ++ KLG R++ ++ ++F + A Sbjct: 215 TPDAPEGVKGISLFVVPKFLVNADGSLGARNDAYCVSIEHKLGIRASPTAVLQFGDHGGA 274 Query: 279 LGIMVGEDGRGIPTIIEMANHTRLDCVIGSTALMRQALVQAIHHARHR--------NAFG 330 +G +VGE+ RG+ T+ M N R I A+ +A +A+ +A+ R +A Sbjct: 275 IGTLVGEENRGLETMFIMMNAARFAVGIQGIAVAERAYQKAVSYAKDRVQSKDLEGSATA 334 Query: 331 RLLAEQPLMRAVLADLALESEAATMLMLRLAHAFD-------APDDPLQRAWKRIVTPAA 383 + QP +R +L + + EAA L A AFD A +A+ + P Sbjct: 335 VSIIHQPDVRRMLMSMRAQIEAARALAYVGAAAFDIAHHHADAEVRSSHQAFYEFLVPVI 394 Query: 384 KFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAPVNSIWEGSGNVMCLDVL 438 K W + +++ +++ GG G++E A+ YR+A + +I+EG+ + D++ Sbjct: 395 KGWATEMSIDVASTGLQIHGGMGFIEETGAAQYYRDARILTIYEGTTAIQANDLV 449 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 41/296 (13%) Query: 178 MGMTEKQGGSDVRSNASVAMPADALQQGRGAAYLLTGHKWFFSAPMCDA-----HLMLAR 232 M +TE G+D+ S A P Q G+ Y +TG K F SA D HL+LAR Sbjct: 165 MCLTEAHCGTDLGLLRSKAEP-----QADGS-YKITGSKIFISAGEHDMVQNILHLVLAR 218 Query: 233 TEN------GLSCFFVPRWLPD-----GKRNPVLIQRLKDKLGNRSNSSSEVEFEEALGI 281 + G+S F VP++LP+ G RNP+ L++K+G N++ ++ + A G Sbjct: 219 LPDAPQGTHGISLFIVPKFLPNADGTLGARNPIFCGALEEKMGIHGNATCQMNIDGATGW 278 Query: 282 MVGEDGRGIPTIIEMANHTRLDCVIGSTALMRQALVQAIHHARHR----NAFGRLLAEQP 337 M+G+ +G+ + M N RL + S L A A+ +A+ R + G A++P Sbjct: 279 MIGQPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALLYAKDRLQMRSLTGVKAADKP 338 Query: 338 L--------MRAVLADLALESEA----ATMLMLRLAHAFDAPDDPLQRAWKR---IVTPA 382 +R +L +E ++ + L++ + PD+ +++ ++TP Sbjct: 339 ADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDRELNHPDEAVRKDAADEVALLTPI 398 Query: 383 AKFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAPVNSIWEGSGNVMCLDVL 438 K ++ T E M+V+GG+GY+ M + R+A +N I+EG+ + LD+L Sbjct: 399 IKAFLTDNGWIATSEAMQVYGGHGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLL 454 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,033,100 Number of extensions: 41738 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 3 Length of query: 550 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 464 Effective length of database: 716,977 Effective search space: 332677328 Effective search space used: 332677328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)