BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0769.p
         (274 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096386|ref|YP_001101461.1| putative transcriptional regula...   140   8e-35

>gi|134096386|ref|YP_001101461.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  140 bits (352), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 40  HSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVE 99
           H HR  QLL+A  G+MQV TP+G W+VPP RA+W+PP +EH + +L+ + MR L +    
Sbjct: 17  HVHREAQLLFASSGIMQVTTPKGRWLVPPARAVWLPPGIEHAVDVLADIEMRALLVPSDW 76

Query: 100 GQVIGAQCRL-----LEVSVLLRELILALLAEPRDYAPHSRAGHVAELILSELGRAPAIP 154
                   RL     + V  LLRE ILA     +  A   R   + E+ L EL       
Sbjct: 77  LATHPDALRLNREFVVTVGPLLRETILAAF---KHAANAKRINLLVEVALFELAEDEDAA 133

Query: 155 VAIPWPRDRRLQAICEAILADPGRQFSLADWAGLGGASVRTVIRLFPRETGLQFRHWVQQ 214
             IP P D R + + + ILADP     L   A   GAS RTV RLF  ET L F+ W Q+
Sbjct: 134 TFIPLPNDPRARRVADMILADPANDRELELLAHAAGASARTVTRLFSAETNLTFKEWRQR 193

Query: 215 VHLSEALVRLARGD-AVGVVAQALGYRSQSAFSSMFRKALRSTPNQYLPRQEKR 267
             +  A+  L  G  ++  +A  LG+ S +AF   FR+ +  TP + + R  ++
Sbjct: 194 ARIMAAVEALGSGKTSIKQLAAQLGFSSVAAFGHAFRQIMGMTPGEMMRRSSRK 247


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 466,797
Number of extensions: 17537
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 194
Effective length of database: 736,747
Effective search space: 142928918
Effective search space used: 142928918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)