BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0768.p
         (412 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094872|ref|YP_001099947.1| putative nitrite extrusion prot...    56   3e-09

>gi|134094872|ref|YP_001099947.1| putative nitrite extrusion protein
           [Herminiimonas arsenicoxydans]
          Length = 412

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 25/257 (9%)

Query: 58  LKTGYGLSFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLPCGAVATLLGIVLLALA 117
           +KT  GL+ T+ GL+T    ++ SL++  +G++TDR+    +     +++++ I +++ A
Sbjct: 36  VKTQLGLNETEFGLLTAMPVLSGSLIRVPLGIWTDRYGGRIVFFLLMLSSVVPIYMISYA 95

Query: 118 GSFEAFLLAAALIGIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAA 177
             +  FL+    +G+   +F      +AR     R GLA   F   GN+GSA    +A A
Sbjct: 96  TEYWHFLVLGLFVGLAGGSFSVGTPYVARWFQKERRGLAMGIFG-AGNSGSALTKFVAPA 154

Query: 178 IVVPYGQTNVAWFVLLSVLAI-VVLSRVSAWYRGHLAAGKGRGKVRAAHQLPAA-TVRRA 235
           I+  YG     W +L +V A+ ++++ +  W+  +            +HQ+PA  +    
Sbjct: 155 IIAAYG-----WQMLPNVYALGMLVTALLFWFFSY---------TDKSHQMPAGVSFSEQ 200

Query: 236 LVVLALLVFSKY--FYMASFTSY------FTFYLIERFQMSVASSQLYLFLFLAAVAVGT 287
           + VL      +Y  +Y   F  Y       T Y +  +   +  + L    F     V  
Sbjct: 201 MKVLKDPRVWRYCQYYSVVFGGYVGLALWMTKYYVTEYGFDMQLAALLAACFSLPGGVLR 260

Query: 288 FVGGPIGDRIGRKLVIW 304
            +GG I DR G   V W
Sbjct: 261 ALGGWISDRFGAYQVTW 277


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 510,508
Number of extensions: 15770
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 328
Effective length of database: 723,567
Effective search space: 237329976
Effective search space used: 237329976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)