BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0765.p
         (405 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [...   364   e-102
gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [...   105   6e-24
gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [...    91   1e-19

>gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446
           [Herminiimonas arsenicoxydans]
          Length = 399

 Score =  364 bits (934), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/381 (46%), Positives = 244/381 (64%), Gaps = 2/381 (0%)

Query: 1   MLKKIKTEDLVLGMYFCGFEAAWLDHPFWKNKFLLKHESELKQAHESGIAYCWIDPARGL 60
           MLK+I  E L +GM+   F + W + PFW+   LL +  +L     S +A  WID ++GL
Sbjct: 1   MLKQINVEQLRVGMFIQKFCSTWDESPFWRTSLLLDNLKDLHAIQASDVAQVWIDTSKGL 60

Query: 61  DVAEQEPAQEQDESPASTEPEPLQEPPEPDIDIALLDAAALRENAKKATMAMFSAARMGK 120
           DV  ++P  E + +     P PL  P     D  +  A  +  + K A   MF  ARMGK
Sbjct: 61  DV--KKPVVENEVATQIIAPPPLIVPRRASFDDEMARAKKICADGKVAVTTMFQEARMGK 118

Query: 121 VLDMDRCVSVVEEIAGSVVQSPNGLLSVLRLKLADEYTYLHSVAVCALMVALGRTLGLDE 180
            L+  R  S+VEEI+ SV+++P+ L+S+ RLK  D+YTY+HSVAVCALM+AL R + LD+
Sbjct: 119 ALNTVRAHSLVEEISSSVMRNPDALISLARLKNKDDYTYMHSVAVCALMIALARKMKLDD 178

Query: 181 TACREAGLGGFLHDVGKAFLPQEVLNKPGRLTDEEFSQIKKHPELGYKYLSQDPNVPDYA 240
              R+AGL G LHDVGK  + Q +L+KPG+LTDEEF  +K+HP  G+K LS  P+V + A
Sbjct: 179 GQIRDAGLAGLLHDVGKMMVSQSILDKPGQLTDEEFVVVKEHPVEGHKILSVSPDVSEAA 238

Query: 241 RDVCLHHHEKMDGTGYPESLRAGNISLYSRMAAICDVYDALTSDRPYKRAWDPAEAISSM 300
            DVCLHHHE+ DGTGYP  L   NISL++RM A+CDVYDA+TS+R YK  W+P+E++  M
Sbjct: 239 LDVCLHHHERFDGTGYPHRLAGENISLFARMGAVCDVYDAITSNRAYKAGWEPSESLRRM 298

Query: 301 ATWTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFRYNDNM 360
           A W GHFD A+F AFVK +GIYP G++V+L++GR G V+ Q+   L  P +K+F    + 
Sbjct: 299 AEWKGHFDPAVFQAFVKCIGIYPTGALVRLKTGRIGVVVEQSENSLLTPKVKIFFSVKSN 358

Query: 361 EMSDTEILDLMATPEADTIIA 381
                E++DL      D II 
Sbjct: 359 AYIPPELVDLAKLEGYDKIIG 379


>gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548
           [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  105 bits (261), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 155 DEYTYLHSVAVCALMVALGRTLGLDETACREAGLGGFLHDVGKAFLPQEVLNKPGRLTDE 214
           DEYT  HS  V  L   LG   G+         L    HD+GK  +P  VL KPG LT E
Sbjct: 31  DEYTRFHSDRVVTLATKLGAACGIPLVDMPVLRLAAQFHDIGKIGVPDNVLKKPGPLTQE 90

Query: 215 EFSQIKKHPELGYK-YLSQDPNVPDYARDVCLHHHEKMDGTGYPESLRAGNISLYSRMAA 273
           E+  ++ H E G + + +    + D    +  HHHE ++GTGYP+ L+   I L SR+ A
Sbjct: 91  EWVLMRSHTERGERIFRATGLPIADRIAPIIRHHHEVINGTGYPDGLQGEEIPLMSRILA 150

Query: 274 ICDVYDALTSDRPYKRAWDPAEAISSMATWTG-HFDRAMFLAFVKTL 319
           + D YDA+T+ RPY+ A    +++  +    G  FD A+   F K +
Sbjct: 151 VADAYDAMTTTRPYREALTHRQSLDFIELDKGVKFDTAIVGVFFKMV 197


>gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435
           [Herminiimonas arsenicoxydans]
          Length = 457

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 1/149 (0%)

Query: 157 YTYLHSVAVCALMVALGRTLGLDETACREAGLGGFLHDVGKAFLPQEVLNKPGRLTDEEF 216
           YT  HS  V      +   +GL     R    G  LHDVGK  +   VL+KP +L  +E+
Sbjct: 290 YTSGHSARVALYTDMIAEAMGLSPERRRWLKRGALLHDVGKLGVSNSVLDKPDKLDRDEW 349

Query: 217 SQIKKHPELGYKYLSQDPNVPDYARDVCLHHHEKMDGTGYPESLRAGNISLYSRMAAICD 276
             +K H       LS+     + AR +   HHE++DG GYP  L+A  IS+ +R+    D
Sbjct: 350 DAVKLHATYTENILSRIGAFAELAR-IAGAHHERLDGGGYPRGLKADAISIETRIITTAD 408

Query: 277 VYDALTSDRPYKRAWDPAEAISSMATWTG 305
           ++DA+T++RPY+ A      +  MAT  G
Sbjct: 409 IFDAITAERPYRGAIPIPRTLEMMATTQG 437


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 749,249
Number of extensions: 29348
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 321
Effective length of database: 723,567
Effective search space: 232265007
Effective search space used: 232265007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)