BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0764.p
         (493 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas ...   613   e-177

>gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  613 bits (1581), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/494 (59%), Positives = 375/494 (75%), Gaps = 6/494 (1%)

Query: 3   YLLALDQGTSSSRSIIFDQSGTIVATAQQEFPQIFPQPGWVEHDPMDLWQSQLQTAQRVL 62
           Y+LA+DQGT+SSR+I+F+ +G I    QQE+PQIFP PGWVEHD   +W SQL  AQ+VL
Sbjct: 4   YILAIDQGTTSSRAILFNHAGQIHGMTQQEYPQIFPAPGWVEHDANAIWHSQLAVAQQVL 63

Query: 63  AQSGIQASELTALGITNQRETTVVWERATGKPVYNAVVWQDRRAEVVCAALRERGLGEAI 122
            +  + A+++ A+GITNQRETTV+W+R TG+P+ +A+VWQDRR   +C  LR  G     
Sbjct: 64  KEQHLSAADIAAIGITNQRETTVLWDRQTGEPIAHAIVWQDRRTAALCDQLRADGKAPLF 123

Query: 123 QNKTGLVLDPYFSGTKLRWILDNVAGLRERAERGELLFGTVDAWLVWNLTGGRLHVSDVS 182
           Q KTGLVLD YFSGTKL+W+LD+  G R RAERGEL FGT+D+WL++ L+G   HV+D S
Sbjct: 124 QQKTGLVLDSYFSGTKLKWLLDHTPGARVRAERGELAFGTIDSWLIFKLSGN--HVTDTS 181

Query: 183 NASRTMLWNIHTGAWDEELLQWLGIPASMLPQVHASSHLFGEIDAAHLGAAVKIGGIAGD 242
           NASRT+L+NIHT  WD+ELL  L IP S+LP +  SS + G+   +  G ++ I GIAGD
Sbjct: 182 NASRTLLFNIHTKQWDDELLALLDIPHSLLPAIVPSSGIVGQTYTSLFGQSIPIAGIAGD 241

Query: 243 QQSALFGQACLRPGMAKNTYGTGCFMLLHTGDQCATSHNGLISTAA----CQVDAQKQYA 298
           QQ+A FGQAC RPGMAKNTYGTGCFMLL+TG Q   SHN L++T        VDA+  Y 
Sbjct: 242 QQAATFGQACHRPGMAKNTYGTGCFMLLNTGTQAIASHNNLLTTIGWTLGNDVDARTDYM 301

Query: 299 LEGSVFIGGAVVQWLRDGLKAIKTSTDVEGLACTVEDSGGVVFVPSFTGLGAPYWNPTAK 358
           LEGSVF+ GA++QWLRDGL  I+ S+DVE LA +V D+GGVVF+P+F+GLGAPYW+P A+
Sbjct: 302 LEGSVFMAGAIIQWLRDGLGIIQHSSDVEALATSVPDNGGVVFIPAFSGLGAPYWDPYAR 361

Query: 359 GAIVGLSRGSTVAHIARAALESIAFQSSALLNAMVRDAVSPITELRVDGGAAANNLLLQF 418
           G IVG++RGS  AHIARAALESIA+Q+  +L AM +DA   + ELRVDGGAA N+LL+QF
Sbjct: 362 GTIVGMTRGSNKAHIARAALESIAYQTVDVLEAMQKDAQILLQELRVDGGAARNDLLMQF 421

Query: 419 QADLLGIPVIRPQVTETTALGAAYLAGLATGVYRDVSELSSQWRMERRFEPGITRDEAEE 478
           QAD+L +PVIRP VTETTALGAAYLAGLA   +    E+++QW+MERRFEP +T DE  +
Sbjct: 422 QADMLNVPVIRPVVTETTALGAAYLAGLAVAFWESKEEIATQWQMERRFEPRMTDDEHAQ 481

Query: 479 RIGAWEAAIRQVRA 492
           R+  W  A+++ +A
Sbjct: 482 RLYTWHRAVQRAQA 495


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 915,291
Number of extensions: 36586
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 408
Effective length of database: 720,272
Effective search space: 293870976
Effective search space used: 293870976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)