BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0759.p (362 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 171 7e-44 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 157 7e-40 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 118 5e-28 gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 116 2e-27 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 93 2e-20 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 171 bits (432), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 146/244 (59%), Gaps = 11/244 (4%) Query: 4 IEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSE 63 IE KN+ +G N +L D +L+ + G ALLGPSGCGK+TLL II+GL QP Sbjct: 3 IEVKNINKKFG-NFVALNDVSLE-----FPAGELTALLGPSGCGKTTLLRIIAGLEQPDH 56 Query: 64 GQVLFDGQDMTRKATRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAERE----VQAR 119 GQVL DG+D + + RER + VFQ L+ M+VF+N+AF LR R A R ++ + Sbjct: 57 GQVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEK 116 Query: 120 VREIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWEL 179 V ++ E++ L + LS +Q+I+L R L + +L DEP +D ++ EL Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALA-VEPRVLLLDEPFGALDAKVRKEL 175 Query: 180 RQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGY 239 R+ L+ +H +L +T I+VTHDQ EAL AD++V+M +G V Q G P+ ++ P FV Sbjct: 176 RRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYG 235 Query: 240 FIGS 243 F+G+ Sbjct: 236 FLGN 239 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 157 bits (397), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 161/304 (52%), Gaps = 24/304 (7%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA +E +NL +G N + +++ E G + LLGPSGCGK+TLL +I+G + Sbjct: 1 MALLEIRNLTRRFGDNTV------VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDE 54 Query: 61 PSEGQVLFDGQDMTRKATRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 P G++L DG D+T +R + VFQ L+ M+V N+AFPL + E++ +V Sbjct: 55 PDAGKILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKV 114 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 E E + LT + LS +Q++S+ R LV + +L DEPL+ +D ++ +++ Sbjct: 115 DEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRP-KLLLLDEPLSALDAQLREQMQ 173 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 +L + ++ +T +YVTHDQ EAL + + VM +G + Q +P ++ P FV F Sbjct: 174 IELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADF 233 Query: 241 IGSPGMNFCSLRVEGDAVLLGQQRIQLDAAQLQALK---------NSSGELKLGIRPEFV 291 IG+ C+L +G + + LD + A+K S G + L RPE + Sbjct: 234 IGT-----CNL-FDGTVTQIAGDTMLLDVPGMGAVKALTVAGVQVGSKGTIAL--RPEKI 285 Query: 292 ELAA 295 +++A Sbjct: 286 QVSA 289 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 118 bits (295), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 13/231 (5%) Query: 25 LQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSEGQVLFDGQDMTR---KATRE- 80 + ++ + G LLG SGCGK+T+L I+G +EG + G++++ AT E Sbjct: 34 VHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPET 93 Query: 81 RNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARVREIAEMLDLTRDLKQRAAGL 140 R I VFQ L+ +SV DN+ F LR K+A E QAR+ + ++ L K+ L Sbjct: 94 RQIGVVFQDYALFPHLSVADNVGFGLR--KLAAPERQARIAALLTLVGLASQGKKFPHEL 151 Query: 141 SADAKQKISLGRGLV-RKDVAAILFDEPLTVIDPHMKWELRQKLKEIHHQLKLTLIYVTH 199 S +Q+++L R L + D+ +L DEP + +D ++ L ++++I ++ T + VTH Sbjct: 152 SGGQQQRVALARALAPQPDL--LLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 209 Query: 200 DQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYFIG----SPGM 246 DQ EA AD++ VM +G +VQ L+ RP + FV FIG +PG+ Sbjct: 210 DQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGVFTPGI 260 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 14/244 (5%) Query: 4 IEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSE 63 +E +NL AYG P L + M + G A++G SG GK+T+L +I G L P Sbjct: 5 VEIRNLHFAYGERPI------LSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQA 58 Query: 64 GQVLFDGQDMTRKATR-----ERNIAQVFQFPVLYDTMSVFDNLAFPLR-NRKIAEREVQ 117 G V+ DGQ ++ T+ R + +FQ L+ MSVFDN+AFPLR + + E+ + Sbjct: 59 GNVVVDGQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNVAFPLREHTDLPEQLIH 118 Query: 118 ARVREIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKW 177 V + + L + + A +S ++++L R + D I++DEP +DP Sbjct: 119 DLVLMKLQAVGLRNAAQLKPAEISGGMARRVALARA-IALDPQLIMYDEPFAGLDPISMG 177 Query: 178 ELRQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFV 237 +++++ L T I V+HD E+ AD V ++ GKVV QG P + D +V Sbjct: 178 MTANLIRKLNDALGSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMMASTD-PYV 236 Query: 238 GYFI 241 F+ Sbjct: 237 KQFV 240 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 8/198 (4%) Query: 25 LQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSEGQVLFDGQDM------TRKAT 78 L+ +N+ G A++G SG GKSTLL+++ GL PS G V QD TR Sbjct: 25 LKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLHQDFASLDEKTRGNL 84 Query: 79 RERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARVREIAEMLDLTRDLKQRAA 138 R R++ V+QF L S DN+A PL R++ + R I + L + Sbjct: 85 RNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQAHETARAILARVGLEHRVTHVPG 144 Query: 139 GLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELRQKLKEIHHQLKLTLIYVT 198 LS +Q+++L R LV + A +L DEP +D H + + E+ L + VT Sbjct: 145 ELSGGERQRVALARALVTQP-ACVLADEPTGNLDRHTAHKTFDLMLELSRTLGTAFVIVT 203 Query: 199 HDQVEALTFADEVVVMTE 216 HD +E T D ++ +++ Sbjct: 204 HD-IELATHCDRILRLSD 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 683,780 Number of extensions: 27273 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 41 Length of query: 362 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 279 Effective length of database: 726,862 Effective search space: 202794498 Effective search space used: 202794498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)