BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0758.p (366 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 179 2e-46 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 158 3e-40 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 132 2e-32 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 103 2e-23 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 100 8e-23 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/260 (38%), Positives = 153/260 (58%), Gaps = 6/260 (2%) Query: 3 LELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVD 62 LE++ + + G T + + L + G LLGP+ GKT+L+R+IAG D+P AG++L+D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 63 GQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKLHI 122 G D+TGV +R + V+Q + +P +TV NIA PL + P+ EI ++V+E E + + Sbjct: 64 GVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRL 123 Query: 123 AHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATG 182 R P ELSGGQ+QR ++ARAL+ R L+LLDEPL LD +LRE+++ ELI+L Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 183 DTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVA------AIFNDP 236 T VY T + EAL L AVM++G + QL +++ P S VA +F+ Sbjct: 184 GITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFDGT 243 Query: 237 PMNVLEATAVSTAPGVAAIR 256 + T + PG+ A++ Sbjct: 244 VTQIAGDTMLLDVPGMGAVK 263 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 4/239 (1%) Query: 1 VTLELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 +++E+K + K G L + L G + LLGP+ GKT+L+RIIAGL++P G+VL Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQ----KQPEQEISKRVNEI 116 +DG+D + VRER + V+Q + + +TV+ENIA LR++ + E I ++V ++ Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKL 120 Query: 117 AEKLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELI 176 E + + L R P +LSGGQ+QR ALARAL ++LLDEP LD K+R+ELR L Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 177 SLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFND 235 L T ++ T + +EAL + +M++G + Q+ +++N+PAS V + Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN 239 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 128/236 (54%), Gaps = 8/236 (3%) Query: 1 VTLELKQVAKTVGAQTH--LYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGR 58 ++LE +V +G Q H ++ L L +G I LLG + GKT+++R IAG + T G Sbjct: 15 LSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGS 74 Query: 59 VLVDGQDVTGVGV----RERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVN 114 + + G++++ R + +V+Q + +P L+V +N+ LR PE++ R+ Sbjct: 75 ITLGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPERQ--ARIA 132 Query: 115 EIAEKLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSE 174 + + +A ++ P ELSGGQQQR ALARAL + L+LLDEP NLD LRE L SE Sbjct: 133 ALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASE 192 Query: 175 LISLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVA 230 + + TT V T + EA + VM +G ++Q L++ PA+ VA Sbjct: 193 VRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVA 248 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 6/231 (2%) Query: 3 LELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVD 62 +E+K V+K G+ L +AKG + V+ GP+ +GK++L++ + GL+ G + VD Sbjct: 2 IEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVD 61 Query: 63 GQDV----TGVGVRERNLAMVYQQFINYPGLTVWENIA-APLRLQKQPEQEISKRVNEIA 117 G V T + + MV+Q F +P L++ EN+ +R+ + E+E ++R + Sbjct: 62 GISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKYL 121 Query: 118 EKLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELIS 177 +++ + + PG+LSGGQQQR A+ARAL +L DEP LD ++ E+ ++ Sbjct: 122 DRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMVG 181 Query: 178 LFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTR 228 L G T +V T E A + M +G +++ E F + S R Sbjct: 182 LAQDGMTMMV-VTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDR 231 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 100 bits (250), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 6/181 (3%) Query: 18 LYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVDGQDVTGV------GV 71 L ++L + KG ++G + +GK++L+ ++ GLD P+AG V + QD + + Sbjct: 25 LKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLHQDFASLDEKTRGNL 84 Query: 72 RERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKLHIAHLLQRLPG 131 R R+L VYQ P + +N+A PL +++ P ++ + I ++ + H + +PG Sbjct: 85 RNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQAHETARAILARVGLEHRVTHVPG 144 Query: 132 ELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATGDTTVVYATT 191 ELSGG++QR ALARAL+ + VL DEP NLD + ++ L T T V T Sbjct: 145 ELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAHKTFDLMLELSRTLGTAFVIVTH 204 Query: 192 E 192 + Sbjct: 205 D 205 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 665,760 Number of extensions: 26670 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 43 Length of query: 366 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 283 Effective length of database: 726,862 Effective search space: 205701946 Effective search space used: 205701946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)