BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0757.p
         (513 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096535|ref|YP_001101610.1| glycerol-3-phosphate dehydrogen...   606   e-175

>gi|134096535|ref|YP_001101610.1| glycerol-3-phosphate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 511

 Score =  606 bits (1562), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/504 (60%), Positives = 383/504 (75%), Gaps = 8/504 (1%)

Query: 3   LEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSSSTKLIHGGLRYLEYYEF 62
           L  D+L+VGGGINGAGIARDAAGRGL V+LCE+ DLA HTSS+STKLIHGGLRYLE Y+F
Sbjct: 5   LHCDILIVGGGINGAGIARDAAGRGLSVVLCEKDDLASHTSSASTKLIHGGLRYLEQYDF 64

Query: 63  KLVRKALQEREVLLRSAPHIIWPLRFVMPHDASQRPAWMIRAGLFMYDHLAKREILPASE 122
            LVRKAL ERE+LLRSAPHII PLRFVMP D  QRPAWMIRAG+F+YDHLA+RE+LP S+
Sbjct: 65  GLVRKALIEREILLRSAPHIIRPLRFVMPQDKGQRPAWMIRAGMFIYDHLARRELLPGSQ 124

Query: 123 GVNLGRHAAGQPLKGDYRRGFVYSDGWVDDARLVVLNAMDAQEHGARILTRTKCVSARRD 182
           G++L +HAAG PLK  + +GF YSDGWVDDARLVVLNA+ A+E+GA ILTRT C++ +R 
Sbjct: 125 GIDLRKHAAGTPLKDCFTKGFAYSDGWVDDARLVVLNAIAARENGATILTRTACIAVQRT 184

Query: 183 GQTWHAVLEHQAAGSVQQEEVRARAIVNAAGPWAARFAQAVPQAKTGRSLRLIKGSHIVV 242
           G  W+A L +    ++   EV AR +VNA GPWAA F       + G+ LRLIKGSHIVV
Sbjct: 185 GDQWNATLRNADNATI---EVNARLLVNATGPWAAEFLHDTVHGRAGKKLRLIKGSHIVV 241

Query: 243 KRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGQVEIDAEEIDYLCQMA 302
           K+LFDHP AYIFQ+PD RI+FAIPY+ ++TLIGTTD++YHGD   V IDA EI+YLC++ 
Sbjct: 242 KKLFDHPCAYIFQHPDGRIVFAIPYEHDYTLIGTTDIDYHGDTDTVAIDATEINYLCELV 301

Query: 303 NRYFNRQISKSDVVWTYSGVRPLLDDS----AENASAITRDYLLECDDAGAPMLNVWGGK 358
           N YF R I+ +DVVW+YSGVRPL++D     +E+AS +TRDY L  D   AP+L+V+GGK
Sbjct: 302 NHYFARPITPADVVWSYSGVRPLVEDDKVNESESASEVTRDYKLAFDTDAAPLLSVFGGK 361

Query: 359 ITTYRKLAEEALSMLAPHLGASTQPWTAGAPLPGGDLEQAG-KMVARYDFDGWLRQFQAR 417
           ITT+RKLAEEAL ++AP LG     WTA + LPGGD+  A     A  +FD ++R+ Q +
Sbjct: 362 ITTFRKLAEEALDLIAPVLGNHHGAWTAESCLPGGDIFGAKPNNRAVLEFDRFVREMQQQ 421

Query: 418 HPWLPAELAHRYARSYGSRVEQFIGQADSLAALGEELSPGLYEAEAHYLVQHEWARSADD 477
           + WLPA L  RYAR+YG+R+   +     LAA+G+E++PGL+ AE  YL ++EWA  A D
Sbjct: 422 YAWLPAALLERYARAYGTRLMLLLADRSGLAAMGKEITPGLFVAEVEYLQRYEWATCAGD 481

Query: 478 ILWRRSKLGLHSGPQHRGRLEAWL 501
           ILWRR+K GLHS       LEAW+
Sbjct: 482 ILWRRTKCGLHSTGAAEHELEAWM 505


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,009,354
Number of extensions: 42472
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 427
Effective length of database: 716,977
Effective search space: 306149179
Effective search space used: 306149179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)