BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0753.p (251 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 185 2e-48 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 166 1e-42 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 163 6e-42 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 102 2e-23 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 90 1e-19 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 185 bits (469), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 103/247 (41%), Positives = 159/247 (64%), Gaps = 6/247 (2%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 M+ +L++ ++V Y G + A++ + L ++ GE+ L+GANGAGK+TTLKA++ L R Sbjct: 1 MTTTVLKIAGLKVAY-GGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECR 59 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAV 120 G I + GQ I +LVR+ LA V EGR F +S++ENLL G R ++ + Sbjct: 60 ---VDGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGI 116 Query: 121 LRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLV 180 D +E+ +A+FP L+ R +AG SGGEQQM+ + RAL+S P+LL+LDEPSMGL+P++ Sbjct: 117 ADD-MEKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIM 175 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQ 240 V IF ++ R +G+ +L+ EQN+ +ALQ AHRA V+E+G +QG A+ + ++ Sbjct: 176 VEKIF-EVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVR 234 Query: 241 SFYFGES 247 Y GE+ Sbjct: 235 EAYLGEA 241 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 7/224 (3%) Query: 22 LQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQLRSGRILFDGQDIARSSPA 81 L +VS+ + PG+I +LGANGAGKST ++++ L R G IL++G+++A Sbjct: 19 LHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPP-----RQGEILWNGRNLAGEKTH 73 Query: 82 DLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAVLRDALERIYAIFPLLRNRRRS 141 ++ G++ + EGR F +SV ENL G T AV+R+ L R+Y IFP L+ R Sbjct: 74 AIIASGISCIPEGRKVFPRMSVAENLALG-AFLVTNSAVVRERLARVYEIFPRLKERAAQ 132 Query: 142 LAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVADIFAQLSRLNREEGVALLV 201 LAG SGGEQ MV IGR L++ P+LLV+DEPS+GL+PL V + F + R+N G+ +L+ Sbjct: 133 LAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN-ALGITVLL 191 Query: 202 AEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQSFYFG 245 EQN+ L +H VL G + +G AE L D+++ YFG Sbjct: 192 VEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 163 bits (413), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 153/248 (61%), Gaps = 9/248 (3%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 MSAPLL+V+ + V Y G + A + +S+ + GE ++G+NGAGKS+ LKA++ ++ Sbjct: 1 MSAPLLKVENLCVNY-GHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPA- 58 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAV 120 SG I G+ + + ++V QG+A V EGR FA SVE+NL+ G + R V Sbjct: 59 ----SGSITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGV 114 Query: 121 --LRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAP 178 LRD ++R++ +FP L+ RR AG SGGEQQM+VI R L+S PRLL++DE S+GLAP Sbjct: 115 AALRDDIDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAP 174 Query: 179 LVVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSD 238 ++ +F L LNR +G+++L+ EQ + AL RA V+ENG + G + L + + Sbjct: 175 KILDFLFPVLVDLNR-QGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAA 233 Query: 239 IQSFYFGE 246 + Y G+ Sbjct: 234 VMEAYLGK 241 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 132/252 (52%), Gaps = 16/252 (6%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 MS+ L+ V +Q Y GA +++V+L ++ GE+ LLG NGAGK+T+ + L+ + Sbjct: 1 MSSKLI-VSGLQKSY-GARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSD- 57 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENL-----LTGWPGRF 115 +GRI DG DI+R + GL+ + + F LSVE+N+ L G+ Sbjct: 58 ----AGRIELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKA 113 Query: 116 TRRAVLRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMG 175 + + L+ + A + + R L SGGE++ V I RAL + PR ++LDEP G Sbjct: 114 LSKEQIEQRLDTLLADLQIEKLRENQALSL-SGGERRRVEIARALATNPRFVLLDEPFAG 172 Query: 176 LAPLVVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQG-PAEVLR 234 + P+ V +I ++ R +E G+ +L+ + N L RA ++ GA + G P +++ Sbjct: 173 VDPIAVIEI-QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIA 231 Query: 235 QRSDIQSFYFGE 246 S ++ Y GE Sbjct: 232 DES-VRRVYLGE 242 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 16/227 (7%) Query: 6 LQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQLRS 65 L ++ + V+ G + L+++S+ ++PGE+ L+G NGAGKSTT +++ + G ++ Sbjct: 3 LALENVNVILAGNPV-LRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKW 61 Query: 66 GRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENL-LTGWPGRFTRRAVLRDA 124 R +G + +V GL EG F L+VE+N+ L W TR++ R A Sbjct: 62 KRSAINGMQTHK-----IVELGLGYTPEGSDVFGDLTVEDNIALPTW----TRKSG-RSA 111 Query: 125 LERI---YAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVV 181 ERI YA+FP L+ SGGE++MV I RAL P LL+LDE GL+P ++ Sbjct: 112 QERIDEAYAVFPKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAII 171 Query: 182 ADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQG 228 I L + + +G +L+AE N +A R V+E G V +G Sbjct: 172 PTISEGLQSILK-QGRGVLLAESNFYHLPPFADRLYVIERGEIVFEG 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 433,627 Number of extensions: 16968 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 40 Length of query: 251 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 172 Effective length of database: 740,042 Effective search space: 127287224 Effective search space used: 127287224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)