BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0749.p (298 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 117 7e-28 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 90 1e-19 gi|134096410|ref|YP_001101485.1| high-affinity branched-chain am... 76 2e-15 gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 67 1e-12 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 117 bits (293), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 16/306 (5%) Query: 9 FAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAA------LTFVSLVEHG 62 F + + GL+ G MY+LVA+G+ ++Y ++NFA G L+ A L ++ V Sbjct: 4 FIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPD 63 Query: 63 IP----FALALLLTLAAMILLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLW 118 +P +A+L + + + + IERV R L N + + +G+S +++ A ++W Sbjct: 64 LPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAMMIW 123 Query: 119 GTQVHALDLGIDDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADD 178 G + PLH+ +IS + I AA + LL+ T++G RA A++ Sbjct: 124 GRSPLPFPQVMPGEPLHILGALISPTQVMLLILAAASMLLLALLIEKTKLGRAMRATAEN 183 Query: 179 SYAALAVGLRLPRILTAVWATAGLIALIAGLLWGARLG-VQFSLSLVV-LKALPVLVLGG 236 A +G+ R++ + +A IAG++W A QF++ V LKA VLGG Sbjct: 184 PRVAGLMGVDSNRVIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLGG 243 Query: 237 FDSILGAIVGGLLIGALEKLAEVYLGPLV----GSGIEGWFAYVAALAFLLVKPSGLFGQ 292 +I GA++GG+L+G +E L Y+G L GS + FA+V + L ++PSG+ G+ Sbjct: 244 IGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGIMGE 303 Query: 293 AALQRA 298 RA Sbjct: 304 RVADRA 309 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 143/291 (49%), Gaps = 6/291 (2%) Query: 9 FAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVEHGIPFALA 68 F + + GL G +YSLVA+GF +++ +NFA G ++ A+ V + G+ + Sbjct: 4 FLQYVLSGLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGAVLAVVSNDFGLSPYIG 63 Query: 69 LLLTLAAMILLGLSIERVVLRPLVNQSPMTLFM-ATLGLSYVIEGVAQLLWGTQVHALDL 127 + L++ A +L G+ +ER +RP ++ +M T+ + ++E + +G+ AL Sbjct: 64 IPLSIVACVLYGVLVERFAVRPYTKEANAIGWMLTTIAIGIMVESFVTIKFGSFARALPS 123 Query: 128 GIDDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADDSYAALAVGL 187 D P+ + I ++ + L + L F+R T +G RA+A + AA +G+ Sbjct: 124 PGVDKPITIFGAGIYLQEMLIPLFVILFMIGLEVFYRRTMLGRAMRAVAFNRIAAGMMGI 183 Query: 188 RLPRILTAVWATAGLIALIAGLLWGARLGVQFSLSLVV-LKALPVLVLGGFDSILGAIVG 246 + + + +A A + IAG+L G + V ++ +++ LK V ++ S G ++ Sbjct: 184 NVGMVTSFSFALAAGLGGIAGILIGPIIQVSSTMGVLIGLKGFAVAIMASITSARGVVIT 243 Query: 247 GLLIGALEKLAEVYLGPLVGSGIEGWFAYVAALAFLLVKPSGLFGQAALQR 297 GLL G LEK E Y + S + + LL+ P GLFG+ L + Sbjct: 244 GLLYGVLEKFVEGY----ISSAAREVVGFSIMILVLLMFPQGLFGRKELTK 290 >gi|134096410|ref|YP_001101485.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 294 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 21 VMYSLVAIGFVLIYKTSGVLNFAQGAQLL---FAALTF---VSLVEHGIPFALALLLTLA 74 ++Y++VA+GF L + V+ F+ G L+ FA LT V +++ G P+ L + LA Sbjct: 1 MIYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDIGSPWIRLLAVVLA 60 Query: 75 AMI---LLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLW--GTQVHALDLGI 129 A+ LLG +I + ++ PL P+ +ATL L V+ +L + G+ + Sbjct: 61 AVCVTGLLGAAIAKWLVLPLHKAPPLNTLLATLMLGTVMREAVRLFYPDGSNSQPFPSLL 120 Query: 130 DDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADDSYAALAVGLRL 189 + G + + ++ ++ ++A + TR+G+ RA+A D A +G+ Sbjct: 121 PTDAIEFGGFALRADNVILLLSGLAIIAGVHFLITRTRLGMAIRAVAQDGETARLMGINF 180 Query: 190 PRILTAVWATAGLIALIAGLLWGARLG-VQFSLSLVV-LKALPVLVLGGFDSILGAIVGG 247 ++ +A +A +AG++ G + F++ L++ + +LGG +I GAI+GG Sbjct: 181 EAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVIGFAAAILGGLGNIYGAIIGG 240 Query: 248 LLIGALEKLAEVYLG---PLVGSGIEGWFAYVAALAFLLVKPSGLFGQAALQR 297 L L+ L L P + S + FA+ + + KP+GL + + +R Sbjct: 241 FLFAGLQVLGSATLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLIAEKSSER 293 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 66.6 bits (161), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 17/295 (5%) Query: 9 FAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAAL--TFVS--LVEHGIP 64 F +L G+ + LVA G LI+ ++N A G+ A FV+ + G+P Sbjct: 4 FFNILLAGVFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLP 63 Query: 65 FALALLLTLAAMI---LLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLWGTQ 121 L + L A I L+G+ +ER++ R + N+ + T + + + V + WG Sbjct: 64 VHLFPFVLLGAGIVIGLIGIPLERLI-RTIYNRPESFQLLLTFAVMLMFQDVLRFFWGAD 122 Query: 122 VHAL-DLGIDDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADDSY 180 L ++ + L + + ++++ A + ++ F T+ G RA A++ Sbjct: 123 PQQLPNVSMTFGILSAFGVSMPTYNVMVIAVAVSLAIGMAYFLGKTKTGKILRATAENRE 182 Query: 181 AALAVGLRLPRILTAVWATAGLIALIAG--LLWGARLGVQFSLSLVVLKALPVLVLGGFD 238 + A+G+ + R+ V+ ++ I G ++ A ++ + LVV +A V+V+GG Sbjct: 183 TSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVV-EAFAVVVIGGLG 241 Query: 239 SILGAIVGGLLIGALEKLAEVYLGPLVGSGIEGWFAYVAALAFLLVKPSGLFGQA 293 S+ GA VG L++G + L+ +Y E Y LA L+ KP+GL+G+A Sbjct: 242 SMKGAAVGALIVGLIRALSAMYY-----PEAEILAIYAIVLAVLIWKPAGLYGKA 291 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.144 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 368,005 Number of extensions: 10970 Number of successful extensions: 68 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 4 Length of query: 298 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 217 Effective length of database: 733,452 Effective search space: 159159084 Effective search space used: 159159084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)