BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0748.p (291 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 195 2e-51 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 184 5e-48 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 133 1e-32 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 130 9e-32 gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC tr... 111 4e-26 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/253 (42%), Positives = 159/253 (62%), Gaps = 3/253 (1%) Query: 34 VLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQL 93 +L +++VS FGG+QAL+ +++ I +I +IGPNGAGK++ NV++GLY+ G +L Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 94 AGR-YWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIAGLGRA 152 AG+ Y P P + + G+ARTFQN+ LF ++ +N+++GR + A Sbjct: 70 AGKAYSPSAPHL-VAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAA 128 Query: 153 RRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEPMAG 212 R+E RA A +++ F+ + A R L YG Q+R+E+ARAL P+LL LDEP AG Sbjct: 129 RQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 188 Query: 213 MTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTPAAVRQ 272 M TEK + + + + G ILLIEHD+ LV L DR+ VL+YG+ IA+G PA V++ Sbjct: 189 MNATEKLGLRELLVKIKAE-GKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQK 247 Query: 273 DAAVIEAYLGVAH 285 + AVIEAYLG +H Sbjct: 248 NPAVIEAYLGGSH 260 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 184 bits (467), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 152/259 (58%), Gaps = 3/259 (1%) Query: 30 ASAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQG 89 A LQ D++++FGG+ A + + A + +VIGPNGAGKS+ +N +SG YRPT G Sbjct: 343 AGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSG 402 Query: 90 QVQLAGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIAGL 149 ++ G+ + +L R+G+ARTFQN LF ++ +N+++G + R+ + L Sbjct: 403 SIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRL 462 Query: 150 GRARRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEP 209 + + A A ++ ++ L +AE LP+G Q+R+E+ARAL P+LLLLDEP Sbjct: 463 PSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEP 522 Query: 210 MAGMTVTEKSEMAGFVRA-ARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTPA 268 AG+T E ++ +R A Q +LL+EH + ++ +SD V VL+YG+ IA GT A Sbjct: 523 AAGLTHGEIEDLMKLIRNLASHQI--TVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVA 580 Query: 269 AVRQDAAVIEAYLGVAHRE 287 VR + AVIEAY G + Sbjct: 581 EVRSNPAVIEAYFGTGETK 599 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/272 (35%), Positives = 147/272 (54%), Gaps = 18/272 (6%) Query: 21 HATAPLARQASAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVM 80 HA A + + ++ D+++ FGG+ AL ++L I E+L ++GPNG+GK++ NV+ Sbjct: 10 HA-ASMGSSTATSLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVL 68 Query: 81 SGLYRPTQGQVQLAGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRA 140 +GLY+ + G + GR + R GVARTFQ L L+V DNIV+G M+ Sbjct: 69 TGLYKASSGSIIYQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQ- 127 Query: 141 SFLEQIAGLGRARRERQHARALADQMIAFLD---------LGAHAERAVGGLPYGLQKRV 191 GL R+ RA D +A ++ L A V ++R+ Sbjct: 128 ------HGLFFNLFRRKAFRAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRI 181 Query: 192 ELARALVAQPRLLLLDEPMAGMTVTEKSEMAGFVRAARDQFGT-AILLIEHDIGLVFDLS 250 E+ RAL+++PRLLLLDEP AGMT E + + R++ ++LIEH++ ++ ++ Sbjct: 182 EVCRALLSEPRLLLLDEPSAGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRIT 241 Query: 251 DRVAVLNYGRKIADGTPAAVRQDAAVIEAYLG 282 DR V NYG+KIA+GT A + D V AYLG Sbjct: 242 DRCIVFNYGKKIAEGTYAEITADPNVQTAYLG 273 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 130 bits (326), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 6/232 (2%) Query: 34 VLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQL 93 +LQ +S +G AL ++DL++ E ++V+GPNGAGK++LVNV++GL++PT G V Sbjct: 7 LLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHF 66 Query: 94 AGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIAGLGRAR 153 G V L G+AR FQ ++F L+VR+ I + + + + G G Sbjct: 67 NGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRW----NGFGSLF 122 Query: 154 RERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEPMAGM 213 R+ + AF L + LP+G +K +++A A P+++LLDEP AG+ Sbjct: 123 GSRKVNDIVVRTADAF-GLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGV 181 Query: 214 TVTEK-SEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIAD 264 + +K M +RAA+ AI+L+EHD+ LV S R+ + G+KIAD Sbjct: 182 STADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIAD 233 >gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 280 Score = 111 bits (278), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 39/262 (14%) Query: 22 ATAPLARQASAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMS 81 +T P + + P++++ ++ FG V +++L I+ EI++++G +G+GK+ L+ M Sbjct: 13 STTP--QTGAQPIIEIENLCTQFGDVIVHENLNLTINQGEIVSLVGGSGSGKTVLLRQML 70 Query: 82 GLYRPTQGQVQLAG----RYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNI------- 130 GL PT+G V++ G R PQ R G+ FQ+ ALF +V DN+ Sbjct: 71 GLNHPTRGTVRVFGEDINRITPQQLQQLRNRWGML--FQHGALFSSFTVFDNVAQPMREL 128 Query: 131 -VLGRVNAMRASFLE-QIAGLGRARRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQ 188 VL + A+ L+ Q+AG+G HA + L G+ Sbjct: 129 RVLPKQLIRDAALLKLQMAGIG----------------------PEHALKMPSDLSGGMI 166 Query: 189 KRVELARALVAQPRLLLLDEPMAGMTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFD 248 KRV LARAL +P LL LDEP AG+ +R RD+ ++++ HD+ +F Sbjct: 167 KRVALARALALEPELLFLDEPTAGLDPNASESFVDLIRTLRDEMQLTVVMVTHDLDTLFA 226 Query: 249 LSDRVAVLNYGRKIADGTPAAV 270 LS RVAVL R IA P V Sbjct: 227 LSSRVAVLADKRIIAYCEPGKV 248 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 510,022 Number of extensions: 21660 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 43 Length of query: 291 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 210 Effective length of database: 733,452 Effective search space: 154024920 Effective search space used: 154024920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)