BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0744.p (707 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 198 9e-52 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 152 5e-38 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 132 8e-32 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 57 2e-09 gi|134096594|ref|YP_001101669.1| putative TonB-dependent outer m... 56 6e-09 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 198 bits (503), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 184/696 (26%), Positives = 312/696 (44%), Gaps = 61/696 (8%) Query: 36 SATALPEVSVSASKDKSS-----YLAPSTSGATRTDTPLMEIPQAVRVMTTQQIEDLGAV 90 + T LP V+VS ++ ++ Y A +S AT+TDT L E QAV V+T QI D GA Sbjct: 53 AVTTLPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGAT 112 Query: 91 RLADTVDYVSGISRLNDFG--GTWDNFAIRGFSSTDMGFLVNGFPGSRGY---NPRRDTA 145 L D + Y +G+ R + +G D+ +RG +S D+ ++G + Y R D Sbjct: 113 NLQDALTYAAGV-RSDAYGLDSRTDSVLVRG-ASPDV--YIDGLRQANDYYTSAARPDPF 168 Query: 146 TIERIEFLKGPAAALYGSSEPGGTINIVTKKPQFTRKNSAELSAGSGGLKRATVDSTGPL 205 T+ERIE L+GPAA YG GG +N+V+K+PQ + + G+ G K+ D TGPL Sbjct: 169 TLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPL 228 Query: 206 SQNLA--YRLIAMTEEGDSRSSLLSNRRSLVAPSLAWVIDKDTLLNYEAEFLQASTPLDR 263 +++ YRL+A+ D++ + + R+L+APSL W + T L + + + T Sbjct: 229 TEDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTWKPNGVTSLTLQGLYQRDRTGSTS 288 Query: 264 GLINVRGVL-----GGLPRDRVLNEPSDGNMAMRSNTHQLTLERTLSEQWRAKLGASYKE 318 + G+L G +P R + EP D R + L E L++ W + Y Sbjct: 289 QFLPWAGMLTPNVNGMIPTSRFIGEPGDRYDTDRQSLGYL-FEHQLNDNWTFRQNFRYAV 347 Query: 319 SSFDGF--YTEAALSNPLA----------ADNRTLRRTRTWRQLPSRDTSVQAELQGNFS 366 + D F Y ++ ++P + R + R + ++ LQ Sbjct: 348 NEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQAKLQ 407 Query: 367 TGTIGHTLLLGAESSTLWMNTEILRSAALTSIDIYNPVYGSSPLLPLTNRTSSSDEHQRV 426 TG + H LL G + + + + + +ID+Y PVYG+ + L + S QR Sbjct: 408 TGPLQHDLLAGLDYTRYQRDRQ--SGFGMDTIDVYAPVYGNGVVATLADDPQSV---QRQ 462 Query: 427 KAVFVQDQLSLSSQWKLLAGLRWDQYNQSIQNRVGGVTNTSQQQSAVSPRAGISY-LPNA 485 +++QDQ+ + W + AGLR D+ N ++ + ++ A + R G+ Y L N Sbjct: 463 IGLYLQDQIKIGKNWIVSAGLRHDRVNNALAG------SEDEESRATTKRVGVMYLLENG 516 Query: 486 WSSLYLSAGKSFRPNSGVDVNGRAFDPQHSTAYEAGLKLQTSDERLGANFALYDITKTNV 545 WS Y+S +SF P +G + + F P E G+K + A++ I + N Sbjct: 517 WSP-YVSYSESFTPVAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNK 575 Query: 546 LTASDV-PGFMVAAGEAKSTGFEADAYGQLDAHWRISANFSWDNARVTKDKTLAAGTRLT 604 T P + G+ K+ G E + + + A++++ + +L Sbjct: 576 STTDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVLAHYNYTD----------LDEQLD 625 Query: 605 NIPAYSAGLLAIREDATASGARYGLGGGINYVGNRSGNTADTYSLPAYATVKLLSYWQVS 664 +P + A + + + LG G Y+ + A T P+ + L W + Sbjct: 626 EVPRHQAAAWGKWRFSIGGVSGFALGAGARYMSSFRDGVAPT--TPSVTLLDALLSWD-T 682 Query: 665 KHVRLSLDVNNLFNRNYYPGSWNNLYVMPGAERTVV 700 + R +L+VNNL ++ Y + GA R+ V Sbjct: 683 MNWRYALNVNNLTDKVYNATCLSRGDCWYGARRSAV 718 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 193/751 (25%), Positives = 313/751 (41%), Gaps = 114/751 (15%) Query: 38 TALPEVSVSASKDKSSYLAPSTSGATRTDTPLMEIPQAVRVMTTQQIEDLGAVRLADTVD 97 + LPEV V + + SY A + S T PL+ Q + V+ + ++ G L + + Sbjct: 40 SVLPEVEVHGTTE--SYKADTVSSPKFTQ-PLLNTTQTITVIKKELVQQQGGATLTEALR 96 Query: 98 YVSGISRL----NDFGGTWDNFAIRGFSSTDMGFLVNGFPGSRGYNP-RRDTATIERIEF 152 G+ N T D +RGF ++ F+ G R RD IE+IE Sbjct: 97 NTPGVGTFSLGENGNTNTGDAIYMRGFDTSSSIFV----DGVRDLGSISRDIFNIEQIEV 152 Query: 153 LKGPAAALYGSSEPGGTINIVTKKPQFTRKNSAELSAGSGGLKRATVDSTGPLSQN--LA 210 KGPA A G P G+IN+ TK+P S +S GSG KR T D PL + A Sbjct: 153 TKGPAGADTGRGSPTGSINLSTKQPTMKEAYSGSVSVGSGDYKRITADLNKPLDFDGGAA 212 Query: 211 YRLIAMTEE-GDSRSSLLSNRRSLVAPSLAWVIDKDT--LLNYEAEFLQASTPLDRGL-- 265 +R+ + ++ G + ++ N R +A + A+ + +T LNY Q++ P D G+ Sbjct: 213 FRINLLKDDSGVAGRDIVKNDRQGIAAAFAFGLKTNTRTYLNY-LHVDQSNIP-DGGVPT 270 Query: 266 -----------------------INVRGVLGGLPRDRVLN--------EPSDGNMAMRSN 294 I R L G R N + +M Sbjct: 271 IGLPGYSSPVQAANPAATPPVVAIPARPFLNGASRVNSSNFYGTVGDFDDVTADMLTARV 330 Query: 295 THQLTLERTLSEQWR-AKLGASYKESSFDGFYTEAALSNPLAADNRTLRRTRTWRQLPSR 353 H ++ + L R K +Y + F G NP TL R+ + + Sbjct: 331 EHDISPDVKLQNTTRFGKTSQNYLLTGFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNE 390 Query: 354 DTSVQAELQGNFSTGTIGHTLLLGAESSTLWMNTEILRS------AALTSIDIYNPVYGS 407 S Q L F TG + H+L+ G E +++E RS +++ ++YNP Sbjct: 391 IFSNQTNLTAKFDTGAVKHSLVTGVE-----LSSEKQRSLGYAGLGTISAANLYNP---- 441 Query: 408 SPLL------PLTNRTSSSDEHQRVKAVFVQDQLSLSSQWKLLAGLRWDQYNQSIQNRVG 461 +P L P+ N T+S + +V++ D L LS QW++ G+R D Y+ ++ Sbjct: 442 NPYLVRTGYNPVGNGTNSEGRTNTL-SVYLFDTLELSPQWQINGGVRVDHYDTKYESSTL 500 Query: 462 GVTNTSQQQSA--VSPRAGISYLPNAWSSLYLSAGKSFRP------------NSGVDVNG 507 V N + +S ++ + G Y P SSLY+S S +P NS +VN Sbjct: 501 NVRNATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSKQPPGGSNFALSSNANSAANVN- 559 Query: 508 RAFDPQHSTAYEAGLKLQTSDERLGANFALYDITKTNVLTASDVPGFMVAAGEAKSTGFE 567 +DPQ + E G K D+RLG A+Y N + + GF G+ + G E Sbjct: 560 --YDPQETRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEGNATDGF-TQTGKKRVEGVE 616 Query: 568 ADAYGQLDAHWRISANFSWDNARVTKDKTLAAGTRLTNIPAYSAGLLAIREDATASGARY 627 G++ + W++SA ++ R+ D T A + N ++GL + A + Y Sbjct: 617 LGVVGEITSAWQVSAGYT----RMRTDVTAGA---IVNQDG-TSGLSYTPKQAFTAWTTY 668 Query: 628 GLGGGINYVGN----------RSGNTADTYSLPAYATVKLLSYWQVSKHVRLSLDVNNLF 677 L GG G + G + +Y ++ ++VSK+V L L++ NL Sbjct: 669 KLPGGFTIGGGARFVDALHKPKDGAVGTPQFVESYWVYDAMASYEVSKNVSLQLNLYNLA 728 Query: 678 NRNYYPGSWNNLY-VMPGAERTVVARMKIDL 707 +++Y + Y PG ER+ AR+ ++ Sbjct: 729 DKDYVASINKSGYRYTPGIERS--ARLSANI 757 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 132 bits (331), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 194/742 (26%), Positives = 294/742 (39%), Gaps = 125/742 (16%) Query: 36 SATALPEVSVSASKDKSSYLAPSTSGATRTDTPLMEIPQAVRVMTTQQIEDLGAVRLADT 95 S LPEV V S +S +A + S +D PL E P ++ V+T +Q++D D Sbjct: 30 SENVLPEVVV-MSDSESDGIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDA 88 Query: 96 VDYVSGISRLNDFGGTWDNFAIRGFSSTDMGFLVNGFPGSRGYNPRRDTATI-------- 147 V Y + + + G D F+IRGF + DM G N R+D + Sbjct: 89 VKYDASVQNAYNAVGLADWFSIRGF-TLDM-----------GSNYRKDGMVVLAHSMIPM 136 Query: 148 ---ERIEFLKGPAAALYGSSEPGGTINIVTKKPQFTRKNSAELSAGSGGLKRATVDSTG- 203 ER E LKG A G + GG +N V K+P S L A G VD G Sbjct: 137 ENKERFEVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGR 196 Query: 204 PLSQNLAYRLIAMTEEGDSRSSLLSNRRSLVAPSLAWVIDKDTLLNYEAEFL---QASTP 260 + YR+ A + S + R V+ + W + LL + ++ Q S P Sbjct: 197 SDDKRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLSVP 256 Query: 261 LDRGLINVRGVLGGLPRDRVLNEPSDGNMAMRSNTHQL--TLERTLSEQWRAKLGASYKE 318 + L + + G+ +LN S ++ + +T+ L E L+EQW L A+ E Sbjct: 257 GFQLLGPAQRIPTGVSAKTMLNNQS-WSLPVTDDTNNLGIKFEYELNEQWHTTLQANKFE 315 Query: 319 SSFDGFYTEAA------LSNPLAADN----RTLRRTRTWRQLPSRDTSVQAELQGNFSTG 368 D A+ LS AD LRR R + S QA LQG F+ G Sbjct: 316 LRRDDAVALASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTV----MSTQAMLQGKFNAG 371 Query: 369 TIGHTLLLGAESSTLWMNTEILRSAALTSIDIYNPVYGSSPLLPLTNRTSSSDEHQRVKA 428 TI H L LG + N + + IY P Y L P TN S + + ++ Sbjct: 372 TIKHDLTLGMSTMNRRDNYANFLFESAGTGSIYYPKYNPLTLGP-TNPVSLRRKDEE-RS 429 Query: 429 VFVQDQLSLSSQWKLLAGLRWDQYNQSIQNRVGGVTNTSQQQSAVSPRAGISYLPNAWSS 488 VFVQD L+L+ ++KL AG+R+ Q ++ GG+ + + + P + + P + S Sbjct: 430 VFVQDVLTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLL-PNVALVFSPQSNWS 488 Query: 489 LYLSAGKSFRPN----SGVDVNGRAFDPQHSTAYEAGLKLQTSDERLGANFALYDITKTN 544 +Y + + P SG+ DP S E G+K S + + AL+ I + N Sbjct: 489 IYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQD-ISVAAALFQIHRDN 547 Query: 545 VLTASDVPGF-MVAAGEAKSTGFEADAYGQLDAHWRISANFSWDNARVTKDKTLAAGTRL 603 T+ G V AG+ G E A G R T++ TL G + Sbjct: 548 NYTS----GLNYVTAGKEVHRGLELSAQG-----------------RATRNLTL--GASM 584 Query: 604 TNIPAYSAGLLAIREDATASGARYGLGGGINYVGNRSGNTADTYSLPAYATVKLLSYW-- 661 T + A++ DA G R G N +S D Y+LP +KL + W Sbjct: 585 TTLQAFAENT----GDARVEGKRIG-----NVPVLKSAVFMD-YTLPQMPALKLNAMWIY 634 Query: 662 ----------QVSK--------HV----------------RLSLDVNNLFNRNYYPGSWN 687 Q+S+ HV ++N+F++ Y+ + N Sbjct: 635 SSSKVFAPNAQISELNKKVDGYHVLNVGAQYKTKVSGTKTTFRFGIDNVFDKFYWGDASN 694 Query: 688 NL--YVMPGAERTVVARMKIDL 707 Y++PGA R + D Sbjct: 695 AYGGYLIPGAPRVFRLSAQFDF 716 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 11/131 (8%) Query: 55 LAPSTSGATRTDTPLMEIPQAVRVMTTQQIEDLGAVRLADTVDYVSGI-SRLNDFGGTWD 113 L P T A+R ++ E P V+T QQI D GA + + + ++G+ R + G + Sbjct: 39 LTPVTVSASRFESA--EAPIGATVITAQQIRDSGAGSINEAIRKIAGVFGRASQSGTSDS 96 Query: 114 NFAIRGFSST---DMGFLVNGFPGSRG-YNPRRDTA----TIERIEFLKGPAAALYGSSE 165 + +RGF S+ ++ V+G S P +A ++ERIE ++G ++ LYG Sbjct: 97 SLDLRGFGSSSNQNVAIFVDGIRISENELQPAVMSAIAIESVERIEVVRGGSSVLYGEGA 156 Query: 166 PGGTINIVTKK 176 GGTI I+TK+ Sbjct: 157 TGGTIQIITKR 167 >gi|134096594|ref|YP_001101669.1| putative TonB-dependent outer membrane receptor [Herminiimonas arsenicoxydans] Length = 672 Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 32/173 (18%) Query: 14 LAASLITA-APLAWAQTPAQDSGSATALPEVSVSASKDKSSYLAPSTSGATRTDTPLMEI 72 +A +L+ A A+A PA +S T L E++VS S+ P+T G+ Sbjct: 10 IATALVLAFGNTAFAADPANESNIFT-LGEINVSGSRAA----IPATGGS---------- 54 Query: 73 PQAVRVMTTQQIEDLGAVRLADTVDYVSGISRLNDFGGTWDN---FAIRGFSSTDMGFLV 129 ++T +++ D + D +D + G+S GG N F +RGF S + + Sbjct: 55 -----IVTHEEMNDFNRETVVDALDLLPGVSTT---GGGQRNERMFYVRGFDSRQVPVFI 106 Query: 130 NGFPGSRGYN-----PRRDTATIERIEFLKGPAAALYGSSEPGGTINIVTKKP 177 +G P Y+ R T I IE KG ++ LYG + GG +N+V+++P Sbjct: 107 DGIPVYVSYDGYVDLARFTTYDIASIEVAKGFSSVLYGPNTLGGAVNLVSRRP 159 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.128 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,321,965 Number of extensions: 54038 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 6 Length of query: 707 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 619 Effective length of database: 710,387 Effective search space: 439729553 Effective search space used: 439729553 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)