BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0743.p (735 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094777|ref|YP_001099852.1| copper transporting ATPase CopA... 260 1e-70 gi|134096449|ref|YP_001101524.1| copper transporting ATPase [Her... 247 1e-66 gi|134094805|ref|YP_001099880.1| putative cadmium-transporting A... 246 2e-66 gi|134093781|ref|YP_001098856.1| putative metal-transporting P-t... 241 9e-65 gi|134094826|ref|YP_001099901.1| putative toxic metal efflux pum... 235 4e-63 >gi|134094777|ref|YP_001099852.1| copper transporting ATPase CopA [Herminiimonas arsenicoxydans] Length = 790 Score = 260 bits (665), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 194/547 (35%), Positives = 294/547 (53%), Gaps = 28/547 (5%) Query: 55 AAVIALMFVTGRALENHAERRAQQDMSALLAKVPQRAHRY-ENGRIVEVALAQIRPGDRL 113 AAVI + + G+ LE A + + +LL P+ A R ++G +V L + GD L Sbjct: 244 AAVIVSLTLLGQILELKARSQTSAAIKSLLGLAPKTARRINKDGTEEDVPLTHVHIGDAL 303 Query: 114 LVRSGETVPVDGTLL-GAAVVDQSTLSGESLPLSCAQGAFLPSGSINAGEAFELLASSTA 172 VR GE VPVDG + G + VD+S L+GE +P++ QG + ++N + + + Sbjct: 304 RVRPGEKVPVDGVVAEGESAVDESMLTGEPMPVTKRQGDKVIGATLNTSGSLVIHSEKVG 363 Query: 173 EQGTLGHIVRLVHSAQQSRAPAARLADRYALWFVPVALGLAAL---AWLLSG-EPE---- 224 Q L IV++V AQ+SRAP RLAD A +FV V +G+A L W L G EP Sbjct: 364 SQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFVLVVVGIAFLTLVGWGLFGPEPSWVFG 423 Query: 225 --RALAVAVVATPCPLILAVPVALVCAMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGT 282 A+AV ++A PC L LA P++++ A R A +G+L + A+E + ++TL +DKTGT Sbjct: 424 FVNAVAVLIIACPCALGLATPMSIMAATGRAATQGMLFRDAAAIEGMRKVNTLIVDKTGT 483 Query: 283 LTSGKARLTAIDVAPGMEPHDLLRLAASLEQLSAHAIAQAVVAAALARGLPLALPEQVSE 342 LT GK + A G +L++AAS++Q S H +AQA+V A R L L PE Sbjct: 484 LTEGKPAFDRVIAAQGQTETSVLQVAASIDQGSEHPLAQAIVTEARKRSLTLDKPESFES 543 Query: 343 QPGAGLTGQVDGRQVRVGTRDFVLGLDALPDWA--VHPGARIGYEGTAGVYLALDGHLAG 400 G G+ G V G ++ +G + L + +W + EG + +++A+DG L G Sbjct: 544 SSGIGVRGIVAGHRIALG--NTALMDEEKIEWRSLSTQAEELRSEGASVMHVAVDGKLIG 601 Query: 401 VMQLADQVRLETPRALRLLRTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASKL 460 ++ ++D ++ T AL +LR G ++M TGD A ++ LG+ ++ E P KL Sbjct: 602 LVAVSDPIKTTTMEALSVLREAGIN-VIMATGDGVTTAKSVAGKLGISEVHGEVKPQDKL 660 Query: 461 EAIRQARQQG-VTMMVGDGVNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRLA 519 + + +++G V M GDG+NDAPALA ADVG+AMG G A SA + L+ L +A Sbjct: 661 ALVERLQKEGKVVAMAGDGINDAPALAKADVGIAMGT-GTDVAINSAHLTLVKGDLRVIA 719 Query: 520 FAVRLAQQTRRIALQSVVAGMGLSLLAMVVAALGYLPPVAGAVLQELI--------DVAV 571 A L+ T R Q++ + L + +AA G L P G +L +I V+V Sbjct: 720 RARTLSLDTVRNMHQNLGFAFIYNALGIPLAA-GLLYPFTGQLLSPMIAALAMSLSSVSV 778 Query: 572 ILNALRV 578 I NALR+ Sbjct: 779 ITNALRL 785 >gi|134096449|ref|YP_001101524.1| copper transporting ATPase [Herminiimonas arsenicoxydans] Length = 815 Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 185/537 (34%), Positives = 289/537 (53%), Gaps = 20/537 (3%) Query: 55 AAVIALMFVTGRALENHAERRAQQDMSALLAKVPQRAHRYENGRIVEVALAQIRPGDRLL 114 A V+ + + G+ LE A+++ + AL P+ A G ++VA+ +R GD ++ Sbjct: 263 AVVVITLILLGKWLEARAKKQTASAIRALQKLRPESARVRRGGNDIDVAINAVRVGDIVV 322 Query: 115 VRSGETVPVDGTLL-GAAVVDQSTLSGESLPLSCAQGAFLPSGSINAGEAFELLASSTAE 173 VR GE + VDGT+L G++ VD+S ++GESLP+ G + +INA + + Sbjct: 323 VRPGERIAVDGTVLEGSSQVDESLITGESLPVLKQVGDKVTGAAINADGVLLVRTDAIGA 382 Query: 174 QGTLGHIVRLVHSAQQSRAPAARLADRYALWFVPVALGLA---ALAWLLSGEPE-----R 225 + TL I+R+V +AQ +AP RL D+ + FVPV L +A + W L+G Sbjct: 383 ETTLSRIIRMVENAQSEKAPIQRLVDKVSAIFVPVVLAIALFTFIGWWLAGSSMETAIIN 442 Query: 226 ALAVAVVATPCPLILAVPVALVCAMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTS 285 A+ V V+A PC L LA P A++ A+ G+LIK ALE + T+ DKTGTLT Sbjct: 443 AVTVLVIACPCALGLATPTAIMAGTGVAARYGILIKDAEALEIAHRITTVVFDKTGTLTQ 502 Query: 286 GKARLTAIDVAPGMEPHDLLRLAASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPG 345 GK +++ + G+ LL+LAA++++ S H + +AVV A AR L L V PG Sbjct: 503 GKPQVSEF-LTNGIAEDKLLQLAAAIQRDSEHPLGRAVVERAAARHLALLESTAVQALPG 561 Query: 346 AGLTGQVDGRQVRVGTRDFV--LGLDALPDWAVHPGARIGYEGTAGVYLALDGHLAGVMQ 403 G+ V+GR +++G + LG+D + +A ++ G +LA G AGV+ Sbjct: 562 RGMQATVEGRPLQLGNARLMGELGID-MTQFA-QRAQQLEESGHTVSWLAETGAQAGVLG 619 Query: 404 LA---DQVRLETPRALRLLRTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASKL 460 L D ++ P+A+ L LG Q I +LTGD++ A +G LG+D +L++ P K Sbjct: 620 LIAFRDTIKHSAPQAVERLHALGIQTI-LLTGDNQGNANAVGRQLGIDRVLAQVLPGDKS 678 Query: 461 EAIRQARQQG-VTMMVGDGVNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRLA 519 I + +G + MVGDG+NDAPALAAA VG+AM A G A +A + L+ +A Sbjct: 679 AKISALQDEGQIVAMVGDGINDAPALAAAHVGIAM-ATGTDVAMHAAGITLMRGDPALVA 737 Query: 520 FAVRLAQQTRRIALQSVVAGMGLSLLAMVVAALGYLPPVAGAVLQELIDVAVILNAL 576 A+ ++++T Q++ +L+ + +AA G L P+ V+VI NAL Sbjct: 738 DAIDISRRTYNKIRQNLFWAFIYNLVGIPLAAFGLLNPMFAGAAMAFSSVSVISNAL 794 >gi|134094805|ref|YP_001099880.1| putative cadmium-transporting ATPase [Herminiimonas arsenicoxydans] Length = 744 Score = 246 bits (629), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 186/578 (32%), Positives = 298/578 (51%), Gaps = 46/578 (7%) Query: 31 RQWGLDLIALVTLA--GALALQENLTAAVIALMFVTGRALENHAERRAQQDMSALLAKVP 88 + + L++ L++LA GA+A+ + AA++ +F +E+ + RA+ + LL P Sbjct: 182 KTFTLNINFLMSLAVIGAMAIGQWPEAAMVVFLFAVAELIESLSLNRARNAVHGLLKLAP 241 Query: 89 -----QRAHRYENGRIVEVALAQIRPGDRLLVRSGETVPVDGTLL-GAAVVDQSTLSGES 142 Q A + VE A+ GD + V+ GE + +DG + G + V+Q+ ++GES Sbjct: 242 DVVTLQDAIGGWQEKSVETAVV----GDMMRVKPGERIALDGIVTSGESSVNQAPITGES 297 Query: 143 LPLSCAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLVHSAQQSRAPAARLADRYA 202 +P+ G + +GSIN ++ S+ + TL IVR++ Q ++A R D +A Sbjct: 298 MPVDKRIGDAVYAGSINERGLLDIKVSTNSSNSTLARIVRVIEETQNNKAATQRFVDTFA 357 Query: 203 LWFVPVALGLAALA--------------WLLSGEPERALAVAVVATPCPLILAVPVALVC 248 ++ P + +A L WL +AL + V+A PC L+++ PV +V Sbjct: 358 RYYTPAVVVMAILVAVIPPLVFGAEFTPWLY-----KALVMLVIACPCALVISTPVTVVS 412 Query: 249 AMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAIDVAPGMEPHDLLRLA 308 ++ A+ G+LIK G LE L + LDKTGTLT+G+ + + E +L LA Sbjct: 413 GLTAAARLGILIKGGEFLEVGYKLKAIALDKTGTLTAGQPSVVDVKTISNNERETILLLA 472 Query: 309 ASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPGAGLTGQVDGRQVRVGTRDFVLGL 368 ASL+ S H +A A+V A L + PG G+ G++DG +G + L Sbjct: 473 ASLDANSDHPLANAIVKAGPESSLHKVV-TNFEALPGRGVKGEIDGTIYFLGNHRLIEEL 531 Query: 369 DALPDWAVHPGARIGYEGTA--GVYLALDGHLAGVMQLADQVRLETPRALRLLRTLGAQR 426 + A+ + EGTA V LA + + G++ +AD +R ++R L LG Sbjct: 532 KVC-NPAIEALLDV-IEGTAQTAVMLATEKTVVGIIAIADSLRESAIESVRQLNQLGITT 589 Query: 427 IVMLTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQARQQ-GVTMMVGDGVNDAPAL 485 VMLTGD+ A IG +G+ I +E P KL I+ + GV M+GDG+NDAPAL Sbjct: 590 -VMLTGDNNRTAQQIGAHVGISVIKAELLPEDKLTEIKNLQSTYGVVGMLGDGINDAPAL 648 Query: 486 AAADVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQTRRIALQSVVAGMGLSLL 545 A ADVG AMGA G+ A E+A V L+ D L++L ++L++ TR I +Q++ A +G+ + Sbjct: 649 AQADVGFAMGAAGSDTAIETADVALMNDDLEKLPVFIKLSRATRSILIQNISAAIGIKAI 708 Query: 546 AMVVAALGYLPPVAGAVLQELIDVA----VILNALRVL 579 V+A +G +A + DV V+ N LR+L Sbjct: 709 FFVLAFMG----IATLWMAVFADVGASLLVVFNGLRLL 742 >gi|134093781|ref|YP_001098856.1| putative metal-transporting P-type ATPase [Herminiimonas arsenicoxydans] Length = 742 Score = 241 bits (615), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 184/589 (31%), Positives = 295/589 (50%), Gaps = 68/589 (11%) Query: 31 RQWGLDLIALVTLA--GALALQENLTAAVIALMFVTGRALENHAERRAQQDMSALLAKVP 88 + + L++ L++LA GA+A+ + AA++ +F +E+ + RA+ + LL P Sbjct: 180 KTFTLNINFLMSLAVIGAMAIGQWPEAAMVVFLFAVAELIESLSLNRARNAVHGLLKLAP 239 Query: 89 QRAHRYE-NGRIVEVALAQIRPGDRLLVRSGETVPVDGTLL-GAAVVDQSTLSGESLPLS 146 + NG E + GD + V+ GE + +DG + G + V+Q+ ++GES+P+ Sbjct: 240 DVVSLQDANGGWQEKPVESAVVGDMMRVKPGERIALDGVVTSGESSVNQAPITGESMPVD 299 Query: 147 CAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLVHSAQQSRAPAARLADRYALWFV 206 G + +GSIN ++ S+++ TL IVR++ Q ++A R D +A ++ Sbjct: 300 KRMGDSVYAGSINERGLLDIKVSTSSGNSTLAKIVRVIEETQNNKAATQRFVDTFARYYT 359 Query: 207 PVALGLAALA--------------WLLSGEPERALAVAVVATPCPLILAVPVALVCAMSR 252 P + +A L WL +AL + V+A PC L+++ PV +V ++ Sbjct: 360 PAVVVMAILVAVIPPLIFGAEFTPWLY-----KALVMLVIACPCALVISTPVTVVSGLTA 414 Query: 253 CAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAIDVAPGMEPHDLLRLAASLE 312 A+ G+LIK G LE L + LDKTGTLT+G+ + + +L LAASL+ Sbjct: 415 AARLGILIKGGEFLEVGYKLKAIALDKTGTLTAGQPSVVDVKTVGNSNRESILLLAASLD 474 Query: 313 QLSAHAIAQAVVAAALARGLPLALPEQVSEQ--------PGAGLTGQVDGRQVRVGTRDF 364 S H +A A+V A PE + PG G+ G++DG +G Sbjct: 475 VNSDHPLANAIVKAG---------PESSQHKVVANFEALPGRGVKGEIDGTIYYLGNHRL 525 Query: 365 VLGL-------DALPDWAVHPGARIGYEGTA--GVYLALDGHLAGVMQLADQVRLETPRA 415 + L +AL D EG A V LA D + G++ +AD +R Sbjct: 526 IEELKVCSPAIEALLD---------EIEGAAQTAVMLATDKTVVGIIAVADSLRESAIEG 576 Query: 416 LRLLRTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQARQQ-GVTMM 474 +R L LG VMLTGD+ A IG +G++ I +E P KL I+ + GV M Sbjct: 577 VRQLNQLGITT-VMLTGDNNRTAQQIGAQVGINVIKAELLPEDKLTEIKSLQSSYGVVGM 635 Query: 475 VGDGVNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQTRRIALQ 534 +GDG+NDAPALA A+VG AMGA G+ A E+A V L+ D L +L ++L++ TR I +Q Sbjct: 636 LGDGINDAPALAQANVGFAMGAAGSDTAIETADVALMNDDLRKLPAFIKLSRATRSILIQ 695 Query: 535 SVVAGMGLSLLAMVVAALGYLPPVAGAVLQELIDVA----VILNALRVL 579 ++ A +G+ + ++A +G +A + DV V+ N LR+L Sbjct: 696 NITAAIGIKAVFFILAFMG----IATLWMAVFADVGASLLVVFNGLRLL 740 >gi|134094826|ref|YP_001099901.1| putative toxic metal efflux pump [Herminiimonas arsenicoxydans] Length = 767 Score = 235 bits (600), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 179/545 (32%), Positives = 283/545 (51%), Gaps = 29/545 (5%) Query: 31 RQWGLDLIALVTLA--GALALQENLTAAVIALMFVTGRALENHAERRAQQDMSALLAKVP 88 R + L++ L++LA GA+A+ + AAV+ +F +E + RA+ + L+A P Sbjct: 201 RHFSLNMNFLMSLAVMGAIAIGKWPEAAVVIFLFAAAEMIEAMSLDRARNAIKGLMAMTP 260 Query: 89 QRAH-RYENGRIVEVALAQIRPGDRLLVRSGETVPVDGTLL-GAAVVDQSTLSGESLPLS 146 + A R +G VA Q+ + V+ GE +P+DG ++ G + ++Q+ ++GES+P++ Sbjct: 261 EIATVRNSSGEWQTVAADQVVLDAIVRVKPGERLPLDGIIVNGQSTINQAPITGESMPVA 320 Query: 147 CAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLVHSAQQSRAPAARLADRYALWFV 206 G + +G+IN +F+ ++ TL I++ V Q RAP R D++A +++ Sbjct: 321 RQIGDTVFAGTINEMGSFDYRVTALQSNSTLARIIKSVQQVQGERAPTQRFVDQFARYYI 380 Query: 207 PVALGLAALA--------------WLLSGEPERALAVAVVATPCPLILAVPVALVCAMSR 252 P + +A L WL +AL + V+A PC L+++ PV +V ++ Sbjct: 381 PAVVIMAVLVALLPPLLMQAPFQPWLY-----KALVLLVIACPCALVISTPVTVVSGLAA 435 Query: 253 CAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAIDVAPGMEPHDLLRLAASLE 312 A+ G+LIK G LE L + LDKTGT+T GK +T + V + +LLRLAASL Sbjct: 436 AARHGILIKGGLYLELGCKLKAIALDKTGTITLGKPVVTDMLVVGAGDVDNLLRLAASLS 495 Query: 313 QLSAHAIAQAVVAAALARGLPLALPEQVSEQ--PGAGLTGQVDGRQVRVGTRDFVLGLDA 370 Q S H ++ AV+A +R AL E + G G+ G + G +G + LD Sbjct: 496 QRSDHPVSSAVLAWWKSRTSVQALSEVADFEALTGRGVKGAIGGASYYLGNHRLIHELDI 555 Query: 371 L-PDWAVHPGARIGYEGTAGVYLALDGHLAGVMQLADQVRLETPRALRLLRTLGAQRIVM 429 P+ A G + LA + ++ AD VR + A+ L LG ++VM Sbjct: 556 CGPELEATLDA-FERSGKTAIILASETAPLLILVAADTVRAGSAAAVAKLNALGV-KVVM 613 Query: 430 LTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQ-ARQQGVTMMVGDGVNDAPALAAA 488 LTGD+ A I +G+ D Q P KL AI + Q MVGDG+NDAPALA A Sbjct: 614 LTGDNPHTAEAIAAQVGIADARGNQLPDDKLAAINELLAQHACVGMVGDGINDAPALAKA 673 Query: 489 DVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQTRRIALQSVVAGMGLSLLAMV 548 +G AMGA G A E+A V L+ D LD+LA + L+ +T I +Q++ +G+ + +V Sbjct: 674 SIGFAMGAAGTDTALETADVALMDDNLDKLADFIGLSSKTHTILIQNIALALGIKAVFLV 733 Query: 549 VAALG 553 +A G Sbjct: 734 LALSG 738 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,190,813 Number of extensions: 45752 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 11 Length of query: 735 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 646 Effective length of database: 707,092 Effective search space: 456781432 Effective search space used: 456781432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)