BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0741.p
         (418 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [...   332   1e-92
gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [...   104   9e-24
gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [...    77   1e-15

>gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446
           [Herminiimonas arsenicoxydans]
          Length = 399

 Score =  332 bits (852), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 158/365 (43%), Positives = 229/365 (62%), Gaps = 2/365 (0%)

Query: 1   MYFSGFDGAWIASPFWRASFLIRTEAEVRQAQQAGLGHCWIDVHKGLAPSTELQAPDSTS 60
           M+   F   W  SPFWR S L+    ++   Q + +   WID  KGL     +   +  +
Sbjct: 14  MFIQKFCSTWDESPFWRTSLLLDNLKDLHAIQASDVAQVWIDTSKGLDVKKPVVENEVAT 73

Query: 61  DDSSMPP--ATQQDVLNPDLLEALRLYEMGQQTAQEVFNQARLGKSLHVAKCKELVEQIA 118
              + PP    ++   + ++  A ++   G+     +F +AR+GK+L+  +   LVE+I+
Sbjct: 74  QIIAPPPLIVPRRASFDDEMARAKKICADGKVAVTTMFQEARMGKALNTVRAHSLVEEIS 133

Query: 119 ASLAHNADALLSIIRLKRADEYTYLHSIAVCTMMVALARTLGLDDTACQQAGLAGFLHDV 178
           +S+  N DAL+S+ RLK  D+YTY+HS+AVC +M+ALAR + LDD   + AGLAG LHDV
Sbjct: 134 SSVMRNPDALISLARLKNKDDYTYMHSVAVCALMIALARKMKLDDGQIRDAGLAGLLHDV 193

Query: 179 GKAFIPLEVLNKPGLLTEQEYKIVQRHPVLGHAYLSGLVGVPDEVLDVCLHHHQKMDGSG 238
           GK  +   +L+KPG LT++E+ +V+ HPV GH  LS    V +  LDVCLHHH++ DG+G
Sbjct: 194 GKMMVSQSILDKPGQLTDEEFVVVKEHPVEGHKILSVSPDVSEAALDVCLHHHERFDGTG 253

Query: 239 YPARQQDQKISLFSRMAAVCDVYDAVTSHRVYKEAWDPAESLSRMASWQGHFDRTIFLAF 298
           YP R   + ISLF+RM AVCDVYDA+TS+R YK  W+P+ESL RMA W+GHFD  +F AF
Sbjct: 254 YPHRLAGENISLFARMGAVCDVYDAITSNRAYKAGWEPSESLRRMAEWKGHFDPAVFQAF 313

Query: 299 VKMLGIYPLGSIVTLRSGRTALVIQQNRKDLTRPLVKAFTTSAAMEVMEHEIVDLAAAGQ 358
           VK +GIYP G++V L++GR  +V++Q+   L  P VK F +  +   +  E+VDLA    
Sbjct: 314 VKCIGIYPTGALVRLKTGRIGVVVEQSENSLLTPKVKIFFSVKSNAYIPPELVDLAKLEG 373

Query: 359 TDAIV 363
            D I+
Sbjct: 374 YDKII 378


>gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548
           [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  104 bits (259), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 4/172 (2%)

Query: 134 LKRADEYTYLHSIAVCTMMVALARTLGLDDTACQQAGLAGFLHDVGKAFIPLEVLNKPGL 193
           L   DEYT  HS  V T+   L    G+         LA   HD+GK  +P  VL KPG 
Sbjct: 27  LDERDEYTRFHSDRVVTLATKLGAACGIPLVDMPVLRLAAQFHDIGKIGVPDNVLKKPGP 86

Query: 194 LTEQEYKIVQRHPVLGHAYLSGLVGVP--DEVLDVCLHHHQKMDGSGYPARQQDQKISLF 251
           LT++E+ +++ H   G        G+P  D +  +  HHH+ ++G+GYP   Q ++I L 
Sbjct: 87  LTQEEWVLMRSHTERGERIFRA-TGLPIADRIAPIIRHHHEVINGTGYPDGLQGEEIPLM 145

Query: 252 SRMAAVCDVYDAVTSHRVYKEAWDPAESLSRMASWQG-HFDRTIFLAFVKML 302
           SR+ AV D YDA+T+ R Y+EA    +SL  +   +G  FD  I   F KM+
Sbjct: 146 SRILAVADAYDAMTTTRPYREALTHRQSLDFIELDKGVKFDTAIVGVFFKMV 197


>gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435
           [Herminiimonas arsenicoxydans]
          Length = 457

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 140 YTYLHSIAVCTMMVALARTLGLDDTACQQAGLAGFLHDVGKAFIPLEVLNKPGLLTEQEY 199
           YT  HS  V      +A  +GL     +       LHDVGK  +   VL+KP  L   E+
Sbjct: 290 YTSGHSARVALYTDMIAEAMGLSPERRRWLKRGALLHDVGKLGVSNSVLDKPDKLDRDEW 349

Query: 200 KIVQRHPVLGHAYLSGLVGVPDEVLDVCLHHHQKMDGSGYPARQQDQKISLFSRMAAVCD 259
             V+ H       LS  +G   E+  +   HH+++DG GYP   +   IS+ +R+    D
Sbjct: 350 DAVKLHATYTENILS-RIGAFAELARIAGAHHERLDGGGYPRGLKADAISIETRIITTAD 408

Query: 260 VYDAVTSHRVYKEAWDPAESLSRMASWQG 288
           ++DA+T+ R Y+ A     +L  MA+ QG
Sbjct: 409 IFDAITAERPYRGAIPIPRTLEMMATTQG 437


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 781,831
Number of extensions: 30453
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 334
Effective length of database: 723,567
Effective search space: 241671378
Effective search space used: 241671378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)