BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0740.p (308 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 141 5e-35 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 135 3e-33 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 129 3e-31 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 116 1e-27 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 87 1e-18 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 144/275 (52%), Gaps = 3/275 (1%) Query: 12 MVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTEAGQGFY 71 M F VVE +F+ A L ++ + VS+++ LE LGT LL+RTTR+L LTE+G +Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 72 AHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQLKINID 131 C +I+A +EA + G L++A + + P L E++R +P+++++I Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 132 VNDHNVDLMDKSVDLALRVGKLPGAGDIA--LARLEAVLCASPAYLQRQPPIRRPEDLLM 189 + D VDL++ DLA+RVG LP +G IA LA VLCASPAYLQ + PEDL Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 190 HHFLFFT-PVGVDLTLRNRVGHCAQLRLTPSIAVNHARSLRKLVLQGHGVARMLKSKVQD 248 H L ++ D + + A +R+ + N+ LR L G G+ V D Sbjct: 181 HACLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIVAD 240 Query: 249 DLDAGRLQVVLPDWSPDSYCAFITTKYRDAVPAKI 283 D+ AGRL ++ D S + R + AK+ Sbjct: 241 DVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKV 275 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 151/299 (50%), Gaps = 6/299 (2%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 MD L ++ F VE +F+ AA L +T V + I ALE LG LLHR+TR+L LTE Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 66 AGQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQ 125 G + HC ++++ ++A + H ++ G L I+A + +++ P + F+ HP Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 126 LKINIDVNDHNVDLMDKSVDLALRVGKL--PGAGDIALARLEAVLCASPAYLQRQPPIRR 183 LK++ ++ D VDL+ + D+ +R+G P I LA + V+C +P Y ++ + Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 184 PEDLLMHHFLFFTPVGVDL--TLRNRVGHCAQLRLTPSIAVNHARSLRKLVLQGHGVARM 241 +DL H+ L F G N G +R S+ N L + + +G G+A Sbjct: 181 LDDLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAWR 240 Query: 242 LKSKVQDDLDAGRLQVVLPDWSPDSYCAFITTKYRDAVPAKILVCIAQIQAYFRRRHPG 300 ++Q L++G L+ VL D++ Y + VPAK+ + I+ ++ + + PG Sbjct: 241 SVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHLKTMYSQ--PG 297 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 135/275 (49%), Gaps = 2/275 (0%) Query: 15 FSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTEAGQGFYAHC 74 F V++ G AA+ LG T+S+VS+ +S LE L T+LL RTTR++ LT+ G+ F Sbjct: 11 FVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFLKKA 70 Query: 75 ARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQLKINIDVND 134 I+A +EA E ++ G LRI A++ +VP + EF +PQ+ + + ND Sbjct: 71 RAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELTSND 130 Query: 135 HNVDLMDKSVDLALRVGKLPGAG--DIALARLEAVLCASPAYLQRQPPIRRPEDLLMHHF 192 DL++ D+A+R+G L + AL L ASP YLQR PE L H Sbjct: 131 QVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLAGHQL 190 Query: 193 LFFTPVGVDLTLRNRVGHCAQLRLTPSIAVNHARSLRKLVLQGHGVARMLKSKVQDDLDA 252 L F T R L +TP++ + +LR L L G G+A + +DD+ A Sbjct: 191 LGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQGIASLADYMTRDDIAA 250 Query: 253 GRLQVVLPDWSPDSYCAFITTKYRDAVPAKILVCI 287 GRL +L ++ YR+ ++ + C Sbjct: 251 GRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCF 285 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 116 bits (291), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 7/280 (2%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 MD + + F+ +V+ G+ + AA+ELG+T SVS+ ++ +EA L LL+RTTR++ LT Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 66 AGQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQ 125 G+ + A AR+VA + + G L+I+A+ ++ P L F R +P+ Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 126 LKINIDVNDHNVDLMDKSVDLALRVGKLPGAGDIA--LARLEAVLCASPAYLQRQPPIRR 183 + + + + D V+L+++ D +R G+LP A A +A ++CASPAYL+ Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 184 PEDLLMHHFLFFTPVGVDLTLRNRVGHCAQ--LRLTPSIAVNHARSLRKLVLQGHGVARM 241 P DL H+ + + Q +++ S++ N L G G+ Sbjct: 181 PRDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVR 240 Query: 242 LKSKVQDDLDAGRLQVVLPDW---SPDSYCAFITTKYRDA 278 + V L +GRL+ VL DW D Y F T + A Sbjct: 241 SEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSA 280 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 6/290 (2%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 ++ L + +F + +F +AA LG + ++++ + LE +G L HR TR + +TE Sbjct: 2 LNRLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITE 61 Query: 66 AGQGFYAHCARIVALANEARENTESLH-KELVGELRIAASSFMASEYLVPALEEFIRSHP 124 G H +V ++ +T L L G +RI A S + +L+ L IR +P Sbjct: 62 FGTQLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYP 121 Query: 125 QLKINIDVNDHNVDLMDKSVDLALRVGKLPGAGDIA--LARLEAVLCASPAYL-QRQPPI 181 +K+ + V + D++DK +D+ +R+G L + +A + ++ + A+P + R PI Sbjct: 122 GIKLELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKPI 181 Query: 182 RRPEDLLMHHFLFFTPVGVDLTLRNRVGHCAQLRLT-PSIAVNHARSLRKLVLQGHGVAR 240 P+DLL L LT P++ + VL G G + Sbjct: 182 -TPQDLLGLPTTALMDGNTGRIWPWYFADSQPLTLTSPTLVSDDPEVECDAVLAGIGYGQ 240 Query: 241 MLKSKVQDDLDAGRLQVVLPDWSPDSYCAFITTKYRDAVPAKILVCIAQI 290 + + + + +GRL VL D+ P + ++ R VPA+I + +I Sbjct: 241 LSNHQAEPHIRSGRLVTVLDDYQPVPWDLYVYRPQRGPVPARIRLVFDRI 290 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 561,680 Number of extensions: 21938 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 12 Length of query: 308 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 227 Effective length of database: 733,452 Effective search space: 166493604 Effective search space used: 166493604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)