BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0731.p
         (598 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093712|ref|YP_001098787.1| DNA primase [Herminiimonas arse...   909   0.0  

>gi|134093712|ref|YP_001098787.1| DNA primase [Herminiimonas
           arsenicoxydans]
          Length = 602

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/593 (75%), Positives = 509/593 (85%), Gaps = 3/593 (0%)

Query: 1   VIPQSFIQDLLNRVDIVDVVGRYVQLKKGGANYMGLCPFHNEKSPSFTVSPTKQFYHCFG 60
           +IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN+MGLCPFHNEKSPSFTVSPTKQFYHCFG
Sbjct: 1   MIPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFG 60

Query: 61  CGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVM 120
           CGAHGTAI FLIEYSGMGFVEAVKDLAQNVGM+VPE ED +P AQR E+QAKSMALS+ M
Sbjct: 61  CGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMLVPEAEDRLPPAQRAEQQAKSMALSEAM 120

Query: 121 TRANDFYRHQLRAAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYENEALVE 180
            RA DFYR QLR A+ A  YL GRGLTGE+AAR+G+GY+PD WD LR VFPDYE +ALVE
Sbjct: 121 NRACDFYRQQLRHAEGAKNYLIGRGLTGEVAARYGMGYAPDGWDGLRAVFPDYELDALVE 180

Query: 181 SGLVIDKSEEGGG---HRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPET 237
            GLVIDK+EE G     RKRYDRFR RIMFPIRN+KGQVIGFGGRVM  GEPKYLNSPET
Sbjct: 181 CGLVIDKAEEEGADHRQRKRYDRFRDRIMFPIRNSKGQVIGFGGRVMGDGEPKYLNSPET 240

Query: 238 PLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQK 297
           PLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACT IHVQK
Sbjct: 241 PLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTSIHVQK 300

Query: 298 LVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKIIKFLFLPKEHDPDSYVREMGAS 357
           L+RQTDQVIFSFDGD AGRRAARRALEA LP+A DNK+IKFLFLP EHDPDSY+R MGA 
Sbjct: 301 LLRQTDQVIFSFDGDKAGRRAARRALEASLPYAGDNKVIKFLFLPSEHDPDSYIRAMGAE 360

Query: 358 AFEEQIREAMPLSQFLLKEIIGENDLRTPEGRAHAQFAAKPLLQALPASGLRLQIVRSVA 417
           +FE+Q+++AMPLSQFLLKE +G+NDL TPEGRA  QF AKPLLQALP S LRLQIVR +A
Sbjct: 361 SFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARTQFDAKPLLQALPPSSLRLQIVRGLA 420

Query: 418 QATQTTPAELEVLFELEKPVARVRSAPPRSKRSAPVELERQIMRLLVAHPQLSADLDAGA 477
           Q T++TPAE+E LFEL +P++RVR+APP+ KR+APV LERQIMRLLV HP L+A+LD  A
Sbjct: 421 QITESTPAEIEALFELVQPISRVRAAPPKGKRTAPVGLERQIMRLLVEHPVLAAELDQAA 480

Query: 478 LEAIARFAPDRAELLTYLVGVAQSMGEQANFAALVEHLREGGPEFDSMIAEIAAESESEF 537
           L+  A FAP+RA++L  LV +++ MG  ANFA L E LR  G +FD+++AEIAAESES+ 
Sbjct: 481 LDVAAHFAPERADMLVQLVTMSREMGVHANFATLAELLRSSGSDFDTLVAEIAAESESDV 540

Query: 538 DVVRAEMAGAIRQARIRALDDEMQMLVASNLRTEEERNRYRELMQRKEWLKRQ 590
           D  R E+AGAIRQ +++ L  EM+ L+AS L  E+ + RYREL  ++E L+RQ
Sbjct: 541 DAARLELAGAIRQTKMKMLATEMETLIASGLSGEQAQARYRELTLQQEQLRRQ 593


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,107,239
Number of extensions: 46594
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 511
Effective length of database: 713,682
Effective search space: 364691502
Effective search space used: 364691502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)